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The map label for this gene is yodB [H]

Identifier: 66046508

GI number: 66046508

Start: 3927085

End: 3927624

Strand: Direct

Name: yodB [H]

Synonym: Psyr_3279

Alternate gene names: 66046508

Gene position: 3927085-3927624 (Clockwise)

Preceding gene: 66046504

Following gene: 66046512

Centisome position: 64.45

GC content: 59.26

Gene sequence:

>540_bases
GTGGATGTATCGACTTCTCAACGCTACACCGCCCGGGCCAGATGGCTGCACTGGGTCATGGCCATTCTGATCGTGCTGGC
CTACACCCTGATTCTGAGCCGCACTCAGTTCGGCAAGGGCTCTGAATACCGCTTGCTGGTTGTGCAGAGTCACTACTGGG
TCGGCATTCTGATTCTGATCATGGCGTTTTTCCGTGTCGCCGAGCGTCGACGCCATCGTCCGCCCGGCATCACACCGCCA
CTTGAGGGGGCGTTGCGCATTGTCGCGACCCTGACCCATTACGCGCTGTATGCGTTTCTGCTTGCCCAGCCTTTACTGGG
ACTGCTGACGGTGATGGTGGAAAAAGGCGCGCTGCCCATCCCCCTCACCGACCTGCAGATTCCTTGGCCGCTGGCCACCT
CGGACCACCTGGCCGAGACGTTCGAAGACCTGCACAAGTTGCTGGGCTCGATCTTCTACTATGTCATCGGTCTGCATGTG
ATCGCTGCGCTCTGGCACCATCTGGTGCGCAAGGACAATACCCTCAAGCGCATGCTGTAA

Upstream 100 bases:

>100_bases
ATGCACGCGAAAAACTCAGGCCAACATGAAACGCAGGCGCCCGATCGACAGCCTAAGCTGTCTACCAGACCTGCAAAAAA
AAGAGACAAGGAATCAAACC

Downstream 100 bases:

>100_bases
TTCAGGACGCTGACAGAACCCGGGCAAGCGTGGCTTTCACCTTGCCCATTCCGTCGCGCAAGGCCTGTTCGATTTCCGCC
ATGGTAATGACGGTGGTCGA

Product: cytochrome B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MDVSTSQRYTARARWLHWVMAILIVLAYTLILSRTQFGKGSEYRLLVVQSHYWVGILILIMAFFRVAERRRHRPPGITPP
LEGALRIVATLTHYALYAFLLAQPLLGLLTVMVEKGALPIPLTDLQIPWPLATSDHLAETFEDLHKLLGSIFYYVIGLHV
IAALWHHLVRKDNTLKRML

Sequences:

>Translated_179_residues
MDVSTSQRYTARARWLHWVMAILIVLAYTLILSRTQFGKGSEYRLLVVQSHYWVGILILIMAFFRVAERRRHRPPGITPP
LEGALRIVATLTHYALYAFLLAQPLLGLLTVMVEKGALPIPLTDLQIPWPLATSDHLAETFEDLHKLLGSIFYYVIGLHV
IAALWHHLVRKDNTLKRML
>Mature_179_residues
MDVSTSQRYTARARWLHWVMAILIVLAYTLILSRTQFGKGSEYRLLVVQSHYWVGILILIMAFFRVAERRRHRPPGITPP
LEGALRIVATLTHYALYAFLLAQPLLGLLTVMVEKGALPIPLTDLQIPWPLATSDHLAETFEDLHKLLGSIFYYVIGLHV
IAALWHHLVRKDNTLKRML

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=177, Percent_Identity=31.0734463276836, Blast_Score=90, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 20533; Mature: 20533

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVSTSQRYTARARWLHWVMAILIVLAYTLILSRTQFGKGSEYRLLVVQSHYWVGILILI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHH
MAFFRVAERRRHRPPGITPPLEGALRIVATLTHYALYAFLLAQPLLGLLTVMVEKGALPI
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLTDLQIPWPLATSDHLAETFEDLHKLLGSIFYYVIGLHVIAALWHHLVRKDNTLKRML
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
>Mature Secondary Structure
MDVSTSQRYTARARWLHWVMAILIVLAYTLILSRTQFGKGSEYRLLVVQSHYWVGILILI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHH
MAFFRVAERRRHRPPGITPPLEGALRIVATLTHYALYAFLLAQPLLGLLTVMVEKGALPI
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLTDLQIPWPLATSDHLAETFEDLHKLLGSIFYYVIGLHVIAALWHHLVRKDNTLKRML
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]