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The map label for this gene is clpS [H]

Identifier: 66046413

GI number: 66046413

Start: 3813066

End: 3813428

Strand: Reverse

Name: clpS [H]

Synonym: Psyr_3184

Alternate gene names: 66046413

Gene position: 3813428-3813066 (Counterclockwise)

Preceding gene: 66046416

Following gene: 66046412

Centisome position: 62.58

GC content: 54.55

Gene sequence:

>363_bases
ATGCATGCATTCAGCAAGATTCGACTAACATTCAATCAGGATGATCCGCAGTCGCACGAGGACGACTCGGCGGGCATTGC
GGTGCAGGACGCCAAGCCGACCCTGCAGGCGCCACCGATGTACAAGGTGGTTTTATTCAACGATGACTACACCCCGATGG
ATTTCGTCGTAGAAGTGCTCGAGGTGTTTTTTAACCTGAATCGTGAGCTGGCCACCAAAGTCATGCTGGCCGTCCATACA
GAGGGACGGGCAGTCTGCGGATTGTTTACCCGCGACATCGCCGAGACCAAGGCAATGCAGGTCAATCAATACGCCAGGGA
GAGCCAGCATCCGCTACTCTGTGAGATCGAGAAGGACGGTTAA

Upstream 100 bases:

>100_bases
ACCGTTTAGCTGATAGTCAAGGTCATGTGGCAGCCCATTTAAAAACCGTCCAGACTGCGACTAAATTGCTCAATCCGCCC
TCAAACGAACATTTCTTTCC

Downstream 100 bases:

>100_bases
ACGCCGACCACTTGGGTATGAGGTGAAGCTATGTTAAACCGTGAGCTCGAAGTCACCCTCAATCTTGCCTTCAAGGAGGC
ACGTTCGAAGCGTCATGAGT

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MHAFSKIRLTFNQDDPQSHEDDSAGIAVQDAKPTLQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHT
EGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKDG

Sequences:

>Translated_120_residues
MHAFSKIRLTFNQDDPQSHEDDSAGIAVQDAKPTLQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHT
EGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKDG
>Mature_120_residues
MHAFSKIRLTFNQDDPQSHEDDSAGIAVQDAKPTLQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHT
EGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKDG

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=93, Percent_Identity=55.9139784946236, Blast_Score=121, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 13603; Mature: 13603

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAFSKIRLTFNQDDPQSHEDDSAGIAVQDAKPTLQAPPMYKVVLFNDDYTPMDFVVEVL
CCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
EVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKDG
HHHHCCCHHHHHHEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
>Mature Secondary Structure
MHAFSKIRLTFNQDDPQSHEDDSAGIAVQDAKPTLQAPPMYKVVLFNDDYTPMDFVVEVL
CCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
EVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKDG
HHHHCCCHHHHHHEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA