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The map label for this gene is cdaR [H]

Identifier: 66046345

GI number: 66046345

Start: 3734794

End: 3735885

Strand: Reverse

Name: cdaR [H]

Synonym: Psyr_3116

Alternate gene names: 66046345

Gene position: 3735885-3734794 (Counterclockwise)

Preceding gene: 66046347

Following gene: 66046344

Centisome position: 61.31

GC content: 63.46

Gene sequence:

>1092_bases
ATGTTCGCCCTTGACCGAGCGCTGGCCCAGGACATCGTCGACCGGGCCATGGCCATCCTGCCGTACAACGTCAATGTCAT
GGACTACCTGGGCATCATCATCGGCAGCGGTGATGCCGAGCGCTTGTGTACCCGTCATGAGGGTGCGCAGCGAGTGCTGG
CCAACCGGCAGGTGGTGGAAATCGATTCTCTGGCAGCGTCGCAGCTCGGGGGTGTCAAGCCGGGCGTCAATCTACCGCTG
ATGCTCGATCATCAACTGGTGGGCGTGCTCGGCATCACCGGCGAGCCGGACGAGGTGCGGGTGTATGGCGAATTGGTCAA
GATGACTGCCGAGATGCTCATGGAACAGCGTCGTCAGCAGGCTGACCTTCAGTGGCGGGCGCAACGCAGCGAAGACCTGC
TGGCTCGCCTGCTGTTGCCGGATTGTCCCGATAGCCTGGTGGATGAAGCACGACAGTTGGGTTTGCAGCCGCACATTGCG
CGCCAGGTGGTACTGCTGCAGTTTGCCGAGGAGGGGCTGGCTGCCAGCCAGGTTGCCAAATGGCTTGGCACGCGCTATGC
CGACAGCTGGTGCGTGCTGCGTGAGCCGACCTTGCTGTACTGGTGCCGCGCGACGGGCAAGGAGCGTGACGATGCGCTGC
TGCTCAAGCAGTTCGATGAACACCACTGGCCAGTGCTGCGTATGGCCACCGTGGCGCAATCGGCGGACCTGCCCACCCTG
CGCCAGGCCTGCGCGGCAGCGCGGGATCTGCTCGACTACGCCCGTCAGGCAAGGCCGGCGCAGCGCCTGCTGCGTCTTGA
AGCCTATCGGCTGCCAGTGCTGTTCTGGCGTTACCGGCATGACTGGCTGGCCGAACACGTCGCCGAGCCAATGGAGCGTC
TGCACGCGCATGCGCAACTGCTCGACACCTTGTGCAAATGGTTCGAGTACAGCGGCGAAAGTCAGGCCTGCGCCGAAGCG
CTGGGTATCCATCGCAACAGCCTGCGCTACCGGCTGGAGAAGATTGGTGAGTTGACGGGCTGCGACCCTTACAAGACCGA
CGACCTGCTGCAACTCTACCTGGGCGCGCAGATGATCACTCGTCAGACCTGA

Upstream 100 bases:

>100_bases
CCGTGACTACTTTCAGGCACACTCGGGCGTTCTATAACTTCAACAAAATGTATCCATATGCCCAACCATTGCAAGCCTCG
CCACGCGTCAGGAGTCGTTC

Downstream 100 bases:

>100_bases
AGCCGGGTTTTGTTCAAACGCCCGATAATGGCGACGGATCATTGTGCGAGCGGCAGGCGGCAAGCACGGTCTTGAATGAG
AGCATTCGAGCACCGGATCT

Product: putative sugar diacid recognition

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MFALDRALAQDIVDRAMAILPYNVNVMDYLGIIIGSGDAERLCTRHEGAQRVLANRQVVEIDSLAASQLGGVKPGVNLPL
MLDHQLVGVLGITGEPDEVRVYGELVKMTAEMLMEQRRQQADLQWRAQRSEDLLARLLLPDCPDSLVDEARQLGLQPHIA
RQVVLLQFAEEGLAASQVAKWLGTRYADSWCVLREPTLLYWCRATGKERDDALLLKQFDEHHWPVLRMATVAQSADLPTL
RQACAAARDLLDYARQARPAQRLLRLEAYRLPVLFWRYRHDWLAEHVAEPMERLHAHAQLLDTLCKWFEYSGESQACAEA
LGIHRNSLRYRLEKIGELTGCDPYKTDDLLQLYLGAQMITRQT

Sequences:

>Translated_363_residues
MFALDRALAQDIVDRAMAILPYNVNVMDYLGIIIGSGDAERLCTRHEGAQRVLANRQVVEIDSLAASQLGGVKPGVNLPL
MLDHQLVGVLGITGEPDEVRVYGELVKMTAEMLMEQRRQQADLQWRAQRSEDLLARLLLPDCPDSLVDEARQLGLQPHIA
RQVVLLQFAEEGLAASQVAKWLGTRYADSWCVLREPTLLYWCRATGKERDDALLLKQFDEHHWPVLRMATVAQSADLPTL
RQACAAARDLLDYARQARPAQRLLRLEAYRLPVLFWRYRHDWLAEHVAEPMERLHAHAQLLDTLCKWFEYSGESQACAEA
LGIHRNSLRYRLEKIGELTGCDPYKTDDLLQLYLGAQMITRQT
>Mature_363_residues
MFALDRALAQDIVDRAMAILPYNVNVMDYLGIIIGSGDAERLCTRHEGAQRVLANRQVVEIDSLAASQLGGVKPGVNLPL
MLDHQLVGVLGITGEPDEVRVYGELVKMTAEMLMEQRRQQADLQWRAQRSEDLLARLLLPDCPDSLVDEARQLGLQPHIA
RQVVLLQFAEEGLAASQVAKWLGTRYADSWCVLREPTLLYWCRATGKERDDALLLKQFDEHHWPVLRMATVAQSADLPTL
RQACAAARDLLDYARQARPAQRLLRLEAYRLPVLFWRYRHDWLAEHVAEPMERLHAHAQLLDTLCKWFEYSGESQACAEA
LGIHRNSLRYRLEKIGELTGCDPYKTDDLLQLYLGAQMITRQT

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=376, Percent_Identity=35.1063829787234, Blast_Score=188, Evalue=6e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 41274; Mature: 41274

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFALDRALAQDIVDRAMAILPYNVNVMDYLGIIIGSGDAERLCTRHEGAQRVLANRQVVE
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEE
IDSLAASQLGGVKPGVNLPLMLDHQLVGVLGITGEPDEVRVYGELVKMTAEMLMEQRRQQ
HHHHHHHHHCCCCCCCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ADLQWRAQRSEDLLARLLLPDCPDSLVDEARQLGLQPHIARQVVLLQFAEEGLAASQVAK
HCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHH
WLGTRYADSWCVLREPTLLYWCRATGKERDDALLLKQFDEHHWPVLRMATVAQSADLPTL
HHHHHHCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHH
RQACAAARDLLDYARQARPAQRLLRLEAYRLPVLFWRYRHDWLAEHVAEPMERLHAHAQL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDTLCKWFEYSGESQACAEALGIHRNSLRYRLEKIGELTGCDPYKTDDLLQLYLGAQMIT
HHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
RQT
CCC
>Mature Secondary Structure
MFALDRALAQDIVDRAMAILPYNVNVMDYLGIIIGSGDAERLCTRHEGAQRVLANRQVVE
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEE
IDSLAASQLGGVKPGVNLPLMLDHQLVGVLGITGEPDEVRVYGELVKMTAEMLMEQRRQQ
HHHHHHHHHCCCCCCCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ADLQWRAQRSEDLLARLLLPDCPDSLVDEARQLGLQPHIARQVVLLQFAEEGLAASQVAK
HCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHH
WLGTRYADSWCVLREPTLLYWCRATGKERDDALLLKQFDEHHWPVLRMATVAQSADLPTL
HHHHHHCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHH
RQACAAARDLLDYARQARPAQRLLRLEAYRLPVLFWRYRHDWLAEHVAEPMERLHAHAQL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDTLCKWFEYSGESQACAEALGIHRNSLRYRLEKIGELTGCDPYKTDDLLQLYLGAQMIT
HHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
RQT
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]