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The map label for this gene is ydcR [H]

Identifier: 66046316

GI number: 66046316

Start: 3694067

End: 3695485

Strand: Direct

Name: ydcR [H]

Synonym: Psyr_3087

Alternate gene names: 66046316

Gene position: 3694067-3695485 (Clockwise)

Preceding gene: 66046314

Following gene: 66046323

Centisome position: 60.62

GC content: 63.07

Gene sequence:

>1419_bases
ATGCCGCTTATGAAACGCTACGAAAAATTCGCCGCCGACATCTCGGAAATGATTCGCAGCGGCGTCCTGCCCGCCGGGGG
AAAAGTCCCGTCCGTACGGGTCGCGAGCCGCACCTGGTCCGTCAGCCCGGCGACGGTGTTCAAGGCCTATTACCTGCTGG
AAGACAAGGGACTGATTCAGGCCCGCGCACGCTCCGGGTATTACGTGCGTGAGCATGCCGCCAACGCACTGACCGAACCT
GAACTGATCAGACACACCAGCGAAGGCACCGAACTGGGCGTCAGCGACCTGATCTTTTCAGTGCTCGGCTCGCTCAAGGA
CCCGGACACCGTACCGTTCGGCTCGGCGTTTCCCAGCCCGCACCTGTATCCGCTGGCGAGCCTGGCGAAGTCGATGGCGT
CAGCTGTGCGTGCGCTGACGCCTGCTGGCATCGTCAGCGACATGACTACCGGGAATCCCGAGCTGCGCCGACAGATCGCC
CTGCGCTACATGATCAGTGGCGTGCGCTTGCCGGCGGACGAACTGGTCATCACCAATGGCGCGATGGAAGCCCTGAACCT
GTGCCTGCAGTGCGTCACCGAGCCCGGCGACCTGGTCGCCATCGAAGCCCCGGCGTTCTATGCCTGCCTTCAAGTGCTGG
AGCGTCTGAAGCTGAAAGCCGTCGAAATCCCCGTGCATCCGCGTGACGGCGTGGACCTCGACTCGCTGCAGGACAGCCTG
ACACGCCTGCCGATCAAGGCTTGCTGGTTCATGAGCAGCTTTCAGAACCCATTGGGCGCGAGCATGACTCAAGAAAACAG
GACCAGGCTCTACAACCTGCTGGAACAGCAGCAGATCCCGCTGATCGAGGACGATGTGTACGCCGAGCTGTATTACGGCG
CCAACGCGCCTCACCCGGTGAAAAGCCTGGATCGCAGTGGGCTGGTAATGCACTGCAGCTCGTTTTCCAAGACCCTCGCG
CCCGGCTATCGGGTCGGCTGGGTGGCAGGCGGGCGTTACACCGAGCAGATTGACCGCCTCAAGCTCATGACCACCCTCTC
CCCTTCGGTCCCCGCCCAGGCCGCGCTCGCCGACTACCTCAAGCACGGCGGCTATGACCGCCATCTGCGTAAACTGCGTG
ACACCCTCGAACTGCAACAAGGCGCGATGCTCGCTGCTGCCGCCCGCTATTTCCCGGCGGCGACACGCGTCACCCGCCCC
CTCGGCGGCTACTTTCTGTGGTTCGAATTCCCCGAGCAGGTTGATTCGCTGCAGCTCTTTCAACTCGCACTCGCGCAGGG
CATCAGCCTCGCGCCCGGCCCGATCTTTTCCGCTTCCAGGCGCTTCAAGAATTGCGCGCGCCTGAACTACGGCACACCCT
GGGATGAACGCAGCGAGCAGGCCATGGCGATGCTGGGGCGTATCATCGCGTCGTTCTGA

Upstream 100 bases:

>100_bases
CCTGAAACACGTGAACAAGCCATCTGATACTGTTTTTTACAGCTGTTGTGTCTCTGTTCGTTATGGCCGGTTTCGCTCAT
GATGCAGCCTTGTCGATTCG

Downstream 100 bases:

>100_bases
GCGTTTTCATGCCTTGCGGACAGGCAACTGATCCGTATTTTTAAGCCGTTTCTGAATCTGTACCAGAATCAGTCCGAGCA
CGATAATGGCAGCGCTTTCA

Product: transcriptional regulator GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MPLMKRYEKFAADISEMIRSGVLPAGGKVPSVRVASRTWSVSPATVFKAYYLLEDKGLIQARARSGYYVREHAANALTEP
ELIRHTSEGTELGVSDLIFSVLGSLKDPDTVPFGSAFPSPHLYPLASLAKSMASAVRALTPAGIVSDMTTGNPELRRQIA
LRYMISGVRLPADELVITNGAMEALNLCLQCVTEPGDLVAIEAPAFYACLQVLERLKLKAVEIPVHPRDGVDLDSLQDSL
TRLPIKACWFMSSFQNPLGASMTQENRTRLYNLLEQQQIPLIEDDVYAELYYGANAPHPVKSLDRSGLVMHCSSFSKTLA
PGYRVGWVAGGRYTEQIDRLKLMTTLSPSVPAQAALADYLKHGGYDRHLRKLRDTLELQQGAMLAAAARYFPAATRVTRP
LGGYFLWFEFPEQVDSLQLFQLALAQGISLAPGPIFSASRRFKNCARLNYGTPWDERSEQAMAMLGRIIASF

Sequences:

>Translated_472_residues
MPLMKRYEKFAADISEMIRSGVLPAGGKVPSVRVASRTWSVSPATVFKAYYLLEDKGLIQARARSGYYVREHAANALTEP
ELIRHTSEGTELGVSDLIFSVLGSLKDPDTVPFGSAFPSPHLYPLASLAKSMASAVRALTPAGIVSDMTTGNPELRRQIA
LRYMISGVRLPADELVITNGAMEALNLCLQCVTEPGDLVAIEAPAFYACLQVLERLKLKAVEIPVHPRDGVDLDSLQDSL
TRLPIKACWFMSSFQNPLGASMTQENRTRLYNLLEQQQIPLIEDDVYAELYYGANAPHPVKSLDRSGLVMHCSSFSKTLA
PGYRVGWVAGGRYTEQIDRLKLMTTLSPSVPAQAALADYLKHGGYDRHLRKLRDTLELQQGAMLAAAARYFPAATRVTRP
LGGYFLWFEFPEQVDSLQLFQLALAQGISLAPGPIFSASRRFKNCARLNYGTPWDERSEQAMAMLGRIIASF
>Mature_471_residues
PLMKRYEKFAADISEMIRSGVLPAGGKVPSVRVASRTWSVSPATVFKAYYLLEDKGLIQARARSGYYVREHAANALTEPE
LIRHTSEGTELGVSDLIFSVLGSLKDPDTVPFGSAFPSPHLYPLASLAKSMASAVRALTPAGIVSDMTTGNPELRRQIAL
RYMISGVRLPADELVITNGAMEALNLCLQCVTEPGDLVAIEAPAFYACLQVLERLKLKAVEIPVHPRDGVDLDSLQDSLT
RLPIKACWFMSSFQNPLGASMTQENRTRLYNLLEQQQIPLIEDDVYAELYYGANAPHPVKSLDRSGLVMHCSSFSKTLAP
GYRVGWVAGGRYTEQIDRLKLMTTLSPSVPAQAALADYLKHGGYDRHLRKLRDTLELQQGAMLAAAARYFPAATRVTRPL
GGYFLWFEFPEQVDSLQLFQLALAQGISLAPGPIFSASRRFKNCARLNYGTPWDERSEQAMAMLGRIIASF

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=386, Percent_Identity=25.3886010362694, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI33469970, Length=386, Percent_Identity=25.3886010362694, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI4507369, Length=299, Percent_Identity=22.0735785953177, Blast_Score=80, Evalue=6e-15,
Organism=Escherichia coli, GI1787710, Length=466, Percent_Identity=44.8497854077253, Blast_Score=414, Evalue=1e-117,
Organism=Escherichia coli, GI1790797, Length=467, Percent_Identity=34.6895074946467, Blast_Score=286, Evalue=2e-78,
Organism=Saccharomyces cerevisiae, GI6321000, Length=246, Percent_Identity=24.7967479674797, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322401, Length=284, Percent_Identity=25.7042253521127, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21356535, Length=318, Percent_Identity=24.8427672955975, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI18859735, Length=397, Percent_Identity=22.9219143576826, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52038; Mature: 51906

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLMKRYEKFAADISEMIRSGVLPAGGKVPSVRVASRTWSVSPATVFKAYYLLEDKGLIQ
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHH
ARARSGYYVREHAANALTEPELIRHTSEGTELGVSDLIFSVLGSLKDPDTVPFGSAFPSP
HHHCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
HLYPLASLAKSMASAVRALTPAGIVSDMTTGNPELRRQIALRYMISGVRLPADELVITNG
CCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHEEEECC
AMEALNLCLQCVTEPGDLVAIEAPAFYACLQVLERLKLKAVEIPVHPRDGVDLDSLQDSL
HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHH
TRLPIKACWFMSSFQNPLGASMTQENRTRLYNLLEQQQIPLIEDDVYAELYYGANAPHPV
HHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCCCCH
KSLDRSGLVMHCSSFSKTLAPGYRVGWVAGGRYTEQIDRLKLMTTLSPSVPAQAALADYL
HHHCCCCEEEEEHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KHGGYDRHLRKLRDTLELQQGAMLAAAARYFPAATRVTRPLGGYFLWFEFPEQVDSLQLF
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHH
QLALAQGISLAPGPIFSASRRFKNCARLNYGTPWDERSEQAMAMLGRIIASF
HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PLMKRYEKFAADISEMIRSGVLPAGGKVPSVRVASRTWSVSPATVFKAYYLLEDKGLIQ
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHH
ARARSGYYVREHAANALTEPELIRHTSEGTELGVSDLIFSVLGSLKDPDTVPFGSAFPSP
HHHCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
HLYPLASLAKSMASAVRALTPAGIVSDMTTGNPELRRQIALRYMISGVRLPADELVITNG
CCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHEEEECC
AMEALNLCLQCVTEPGDLVAIEAPAFYACLQVLERLKLKAVEIPVHPRDGVDLDSLQDSL
HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHH
TRLPIKACWFMSSFQNPLGASMTQENRTRLYNLLEQQQIPLIEDDVYAELYYGANAPHPV
HHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCCCCH
KSLDRSGLVMHCSSFSKTLAPGYRVGWVAGGRYTEQIDRLKLMTTLSPSVPAQAALADYL
HHHCCCCEEEEEHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KHGGYDRHLRKLRDTLELQQGAMLAAAARYFPAATRVTRPLGGYFLWFEFPEQVDSLQLF
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHH
QLALAQGISLAPGPIFSASRRFKNCARLNYGTPWDERSEQAMAMLGRIIASF
HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]