| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is popC [H]
Identifier: 66046258
GI number: 66046258
Start: 3624696
End: 3626000
Strand: Direct
Name: popC [H]
Synonym: Psyr_3027
Alternate gene names: 66046258
Gene position: 3624696-3626000 (Clockwise)
Preceding gene: 66046257
Following gene: 66046260
Centisome position: 59.48
GC content: 63.3
Gene sequence:
>1305_bases ATGCATACCCTCGCAGACCTACGCGCCGGCAAGCTGGCAGGCATCAAACGGCTTGACCTCTCTTGTGGCCTGAGCGAATT CCCGGTCGAAATCTTCGACCTGGCCGACACGCTGGAAGTCTTGAACCTCAGCGGCAACAGGCTGACCTCACTGCCAGACG ACCTGGGTCGCCTGACCCGCCTGCGCGTGCTGTTCGCATCAGACAACGCCTTTACGCACCTGCCGGAAAGCATTGGCCAA TGCCCGCAGTTGCAGATTGTCGGCCTCAAGGCCAACCGAATAGAGCAGGTCAGCGCCGCGGCACTGCCGCCGCGCCTGCG CTGGCTGATCCTCACCGATAACCGCATCGAGTTGCTGCCCGACGAATTGGGCCGCCGCCCAGACCTGCAAAAGCTGATGC TCGCCGGCAACCGCTTGCGCACCCTGCCCGCAACCCTTGCGCAGTGTCACAAGCTGGAGCTGATCCGCATTGCCGCCAAT CGCCTGACCGAGTTGCCGGACTGGCTGCTGAGCCTGCCTGCGCTGGCATGGCTCGCCTTCGCCGACAATCCGCTGTGCGC CGAACGCCCCTCGGGGCCGATCCGGGAAATCCCCTGGCAACATCTGAGCCTTCATCAACGTCTGGGCGAAGGTGCGTCGG GGATCATTCAACAAGCGGTCTGGCACGACGCCGGCGCTGAGCGCATGGCAGCGGTCAAGCTGTACAAGGGCGCGGTCACC AGCGATGGCTCGCCGCTCAATGAAATGGCCGCGTGCATCGCAGCAGGCCGCCACGCACAGCTGATCGAGGTGCTTGGACA GATCAGCGGACATCCCGAGCAGCAGCGCGGCCTGGTCATGGCGCTGATAGCCCCTGATTTCGGCAATCTGGCCGGCCCGC CGAGCCTGGAATCCTGTAGCCGCGATGTTTACGCCAGCGATACGCGCTTTTCCCTGCCGGTGCTGCTGCGCCTTGCTGAA GGCATCGCATCGGTCACCGCGCACCTGCACGCCCGCGGGATCACGCATGGCGACCTTTATGGTCACAACATTCTTGTGCA GGAGGATGGCCATTGCCTGCTCAGCGACTTCGGCGCGGCGTCCTTTCACCCGTCAGCCGGGCTGGGTGAGGCGCTGGAGC GCATCGAAACGCGAGCATTCGGTATCTTGCTGGGGGAATTGCTGGAGCGTTGCGAGGCAGATCCGCAGGATCACAATGTC ATGGCGGGCCTACAGGGGCTGCAGACAAGATGCGTGCAGCCTGATTGCCAGCAACGACCGTCGCTGGCAGAGGTTCTTCT ACAGATCAAAACATGGAGCGCGTAA
Upstream 100 bases:
>100_bases GGTCGACCGCTGCCTGAGCTGAGCCGCTTTGCAGGGAGTCAGCGGCGGCAACTCCCGTTATCATGCGCGCCTCGTCCGAC ATCAATGACCGAACCTATTC
Downstream 100 bases:
>100_bases AGCGCTCCATTGCGCAGTGATCAGCCTGCCAGGCCCACGTAAACGTTCTGCACGTCATCGTGGTTGTCGATGGCTTCGAG AAACGCTTCGACTTCGGCCA
Product: leucine-rich repeat-containing protein kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 434; Mature: 434
Protein sequence:
>434_residues MHTLADLRAGKLAGIKRLDLSCGLSEFPVEIFDLADTLEVLNLSGNRLTSLPDDLGRLTRLRVLFASDNAFTHLPESIGQ CPQLQIVGLKANRIEQVSAAALPPRLRWLILTDNRIELLPDELGRRPDLQKLMLAGNRLRTLPATLAQCHKLELIRIAAN RLTELPDWLLSLPALAWLAFADNPLCAERPSGPIREIPWQHLSLHQRLGEGASGIIQQAVWHDAGAERMAAVKLYKGAVT SDGSPLNEMAACIAAGRHAQLIEVLGQISGHPEQQRGLVMALIAPDFGNLAGPPSLESCSRDVYASDTRFSLPVLLRLAE GIASVTAHLHARGITHGDLYGHNILVQEDGHCLLSDFGAASFHPSAGLGEALERIETRAFGILLGELLERCEADPQDHNV MAGLQGLQTRCVQPDCQQRPSLAEVLLQIKTWSA
Sequences:
>Translated_434_residues MHTLADLRAGKLAGIKRLDLSCGLSEFPVEIFDLADTLEVLNLSGNRLTSLPDDLGRLTRLRVLFASDNAFTHLPESIGQ CPQLQIVGLKANRIEQVSAAALPPRLRWLILTDNRIELLPDELGRRPDLQKLMLAGNRLRTLPATLAQCHKLELIRIAAN RLTELPDWLLSLPALAWLAFADNPLCAERPSGPIREIPWQHLSLHQRLGEGASGIIQQAVWHDAGAERMAAVKLYKGAVT SDGSPLNEMAACIAAGRHAQLIEVLGQISGHPEQQRGLVMALIAPDFGNLAGPPSLESCSRDVYASDTRFSLPVLLRLAE GIASVTAHLHARGITHGDLYGHNILVQEDGHCLLSDFGAASFHPSAGLGEALERIETRAFGILLGELLERCEADPQDHNV MAGLQGLQTRCVQPDCQQRPSLAEVLLQIKTWSA >Mature_434_residues MHTLADLRAGKLAGIKRLDLSCGLSEFPVEIFDLADTLEVLNLSGNRLTSLPDDLGRLTRLRVLFASDNAFTHLPESIGQ CPQLQIVGLKANRIEQVSAAALPPRLRWLILTDNRIELLPDELGRRPDLQKLMLAGNRLRTLPATLAQCHKLELIRIAAN RLTELPDWLLSLPALAWLAFADNPLCAERPSGPIREIPWQHLSLHQRLGEGASGIIQQAVWHDAGAERMAAVKLYKGAVT SDGSPLNEMAACIAAGRHAQLIEVLGQISGHPEQQRGLVMALIAPDFGNLAGPPSLESCSRDVYASDTRFSLPVLLRLAE GIASVTAHLHARGITHGDLYGHNILVQEDGHCLLSDFGAASFHPSAGLGEALERIETRAFGILLGELLERCEADPQDHNV MAGLQGLQTRCVQPDCQQRPSLAEVLLQIKTWSA
Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]
COG id: COG4886
COG function: function code S; Leucine-rich repeat (LRR) protein
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 22 LRR (leucine-rich) repeats [H]
Homologues:
Organism=Homo sapiens, GI41281398, Length=205, Percent_Identity=33.6585365853659, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI122937315, Length=226, Percent_Identity=30.9734513274336, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI55770895, Length=201, Percent_Identity=32.3383084577114, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI8923909, Length=191, Percent_Identity=32.4607329842932, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI16904383, Length=179, Percent_Identity=33.5195530726257, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI154091020, Length=182, Percent_Identity=29.6703296703297, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI53729363, Length=152, Percent_Identity=34.2105263157895, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI53729359, Length=152, Percent_Identity=34.2105263157895, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI53729361, Length=152, Percent_Identity=34.2105263157895, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI33285015, Length=167, Percent_Identity=36.5269461077844, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI299758423, Length=152, Percent_Identity=34.2105263157895, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI187829877, Length=163, Percent_Identity=33.1288343558282, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI62241040, Length=163, Percent_Identity=33.1288343558282, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI187829871, Length=163, Percent_Identity=33.1288343558282, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI95113664, Length=144, Percent_Identity=35.4166666666667, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI61742784, Length=195, Percent_Identity=34.8717948717949, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI61742786, Length=195, Percent_Identity=34.8717948717949, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI6912638, Length=162, Percent_Identity=35.1851851851852, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI19923729, Length=177, Percent_Identity=30.5084745762712, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI238908508, Length=180, Percent_Identity=31.6666666666667, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI197333706, Length=183, Percent_Identity=29.5081967213115, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI34222199, Length=183, Percent_Identity=29.5081967213115, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI190014581, Length=165, Percent_Identity=32.1212121212121, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI21389431, Length=189, Percent_Identity=28.042328042328, Blast_Score=73, Evalue=7e-13, Organism=Homo sapiens, GI153792305, Length=178, Percent_Identity=32.5842696629214, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI34577083, Length=145, Percent_Identity=35.1724137931034, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI45827729, Length=190, Percent_Identity=33.1578947368421, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI45827731, Length=190, Percent_Identity=33.1578947368421, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI63003903, Length=176, Percent_Identity=34.6590909090909, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI256017180, Length=171, Percent_Identity=30.4093567251462, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI33859670, Length=171, Percent_Identity=30.4093567251462, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI40217803, Length=179, Percent_Identity=32.4022346368715, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI256017174, Length=171, Percent_Identity=30.4093567251462, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI194394161, Length=190, Percent_Identity=30, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI167466264, Length=173, Percent_Identity=32.3699421965318, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI65301141, Length=155, Percent_Identity=31.6129032258064, Blast_Score=66, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71993778, Length=203, Percent_Identity=31.5270935960591, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71993783, Length=204, Percent_Identity=31.3725490196078, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17552452, Length=156, Percent_Identity=35.8974358974359, Blast_Score=76, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17550406, Length=203, Percent_Identity=30.0492610837438, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71981160, Length=184, Percent_Identity=29.8913043478261, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71981152, Length=184, Percent_Identity=29.8913043478261, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71991531, Length=163, Percent_Identity=33.1288343558282, Blast_Score=72, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71998904, Length=178, Percent_Identity=32.5842696629214, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71991525, Length=163, Percent_Identity=33.1288343558282, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71998900, Length=214, Percent_Identity=29.9065420560748, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25143890, Length=167, Percent_Identity=31.1377245508982, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17537883, Length=190, Percent_Identity=25.2631578947368, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI221379725, Length=162, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=4e-16, Organism=Drosophila melanogaster, GI221379722, Length=162, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=4e-16, Organism=Drosophila melanogaster, GI62472958, Length=173, Percent_Identity=34.6820809248555, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24650330, Length=172, Percent_Identity=34.8837209302326, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI281362651, Length=172, Percent_Identity=34.8837209302326, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI281362653, Length=172, Percent_Identity=34.8837209302326, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI281362657, Length=172, Percent_Identity=34.8837209302326, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI24650334, Length=172, Percent_Identity=34.8837209302326, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI24650332, Length=172, Percent_Identity=34.8837209302326, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI281362655, Length=172, Percent_Identity=34.8837209302326, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI116007092, Length=172, Percent_Identity=34.8837209302326, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI24650336, Length=172, Percent_Identity=34.8837209302326, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI19922706, Length=184, Percent_Identity=32.0652173913043, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI19922294, Length=195, Percent_Identity=29.2307692307692, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI17933612, Length=185, Percent_Identity=31.8918918918919, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24641036, Length=165, Percent_Identity=33.9393939393939, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI18858105, Length=160, Percent_Identity=28.125, Blast_Score=69, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001611 [H]
Pfam domain/function: PF00560 LRR_1 [H]
EC number: NA
Molecular weight: Translated: 47226; Mature: 47226
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: PS00107 PROTEIN_KINASE_ATP ; PS50011 PROTEIN_KINASE_DOM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHTLADLRAGKLAGIKRLDLSCGLSEFPVEIFDLADTLEVLNLSGNRLTSLPDDLGRLTR CCCHHHCCCCHHCCCEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH LRVLFASDNAFTHLPESIGQCPQLQIVGLKANRIEQVSAAALPPRLRWLILTDNRIELLP EEEEEECCCCHHHCCHHHCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCEECC DELGRRPDLQKLMLAGNRLRTLPATLAQCHKLELIRIAANRLTELPDWLLSLPALAWLAF HHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADNPLCAERPSGPIREIPWQHLSLHQRLGEGASGIIQQAVWHDAGAERMAAVKLYKGAVT CCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCC SDGSPLNEMAACIAAGRHAQLIEVLGQISGHPEQQRGLVMALIAPDFGNLAGPPSLESCS CCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCCCHHHHC RDVYASDTRFSLPVLLRLAEGIASVTAHLHARGITHGDLYGHNILVQEDGHCLLSDFGAA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCC SFHPSAGLGEALERIETRAFGILLGELLERCEADPQDHNVMAGLQGLQTRCVQPDCQQRP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHCCC SLAEVLLQIKTWSA CHHHHHHHHHCCCC >Mature Secondary Structure MHTLADLRAGKLAGIKRLDLSCGLSEFPVEIFDLADTLEVLNLSGNRLTSLPDDLGRLTR CCCHHHCCCCHHCCCEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH LRVLFASDNAFTHLPESIGQCPQLQIVGLKANRIEQVSAAALPPRLRWLILTDNRIELLP EEEEEECCCCHHHCCHHHCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCEECC DELGRRPDLQKLMLAGNRLRTLPATLAQCHKLELIRIAANRLTELPDWLLSLPALAWLAF HHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADNPLCAERPSGPIREIPWQHLSLHQRLGEGASGIIQQAVWHDAGAERMAAVKLYKGAVT CCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCC SDGSPLNEMAACIAAGRHAQLIEVLGQISGHPEQQRGLVMALIAPDFGNLAGPPSLESCS CCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCCCHHHHC RDVYASDTRFSLPVLLRLAEGIASVTAHLHARGITHGDLYGHNILVQEDGHCLLSDFGAA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCC SFHPSAGLGEALERIETRAFGILLGELLERCEADPQDHNVMAGLQGLQTRCVQPDCQQRP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHCCC SLAEVLLQIKTWSA CHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10792715; 11823852 [H]