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The map label for this gene is ybaO [H]

Identifier: 66046253

GI number: 66046253

Start: 3619950

End: 3620417

Strand: Direct

Name: ybaO [H]

Synonym: Psyr_3022

Alternate gene names: 66046253

Gene position: 3619950-3620417 (Clockwise)

Preceding gene: 66046251

Following gene: 66046254

Centisome position: 59.4

GC content: 60.9

Gene sequence:

>468_bases
ATGCAGCCAAAATTGAGCCCCATCGATCGCAAGATTCTTCGTCTGCTGCAACATGACGCCAGCCTGTCCGCAGCGGAAAT
CGCCGAACGGGTCGAGCTGTCGCAATCGCCCTGCTGGAGGCGCATTCACCGGCTTCAGGAAGACGGGGTGATCGAACGCA
CGGTCGCCCTGCTCAGCACCCAGAAGCTGGGACTGAGCATGACGGTGTTCGTCGAGGTCAAGCTGTCAGGCCATGGCCGC
CGCTATCTGGCCGAGTTCGAGGAGGCAATCATCGGCCACCCCGAGGTGCTGGAGTGCTACACGATGGCCGGGGGGATGGA
TTTCATGCTCAAGGTTGTGGCTCAGGACATCGCCAGCTACGAACGCTTTCTGCGCGATCATTTGCTGCAATTGCCCCACG
TCCACGAGGCCCACTCGAACATCGCCATGAGCACGGTAAAGCGCACCACGGAGCTGCCGCTGGACTAG

Upstream 100 bases:

>100_bases
AGACTGCCAGCAGCAAAGAGGCTTTTTCTTTCTAAATGCGCGCAAATCTGCTGATATTGAGCATGCTTTTTTCGACCAGA
ACAAAAAACAAGGTCAATTC

Downstream 100 bases:

>100_bases
ACGATATAGGGGGAGAATCGAGAAAAGAAAATCCGCCGAGCGAGCGCTGGCGGATTATCGGTATCAATGAGGGCAATAAA
AACATTTGACTTGCAAATGA

Product: regulatory proteins, AsnC/Lrp

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MQPKLSPIDRKILRLLQHDASLSAAEIAERVELSQSPCWRRIHRLQEDGVIERTVALLSTQKLGLSMTVFVEVKLSGHGR
RYLAEFEEAIIGHPEVLECYTMAGGMDFMLKVVAQDIASYERFLRDHLLQLPHVHEAHSNIAMSTVKRTTELPLD

Sequences:

>Translated_155_residues
MQPKLSPIDRKILRLLQHDASLSAAEIAERVELSQSPCWRRIHRLQEDGVIERTVALLSTQKLGLSMTVFVEVKLSGHGR
RYLAEFEEAIIGHPEVLECYTMAGGMDFMLKVVAQDIASYERFLRDHLLQLPHVHEAHSNIAMSTVKRTTELPLD
>Mature_155_residues
MQPKLSPIDRKILRLLQHDASLSAAEIAERVELSQSPCWRRIHRLQEDGVIERTVALLSTQKLGLSMTVFVEVKLSGHGR
RYLAEFEEAIIGHPEVLECYTMAGGMDFMLKVVAQDIASYERFLRDHLLQLPHVHEAHSNIAMSTVKRTTELPLD

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=38.4105960264901, Blast_Score=124, Evalue=3e-30,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=35.8108108108108, Blast_Score=104, Evalue=2e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17627; Mature: 17627

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPKLSPIDRKILRLLQHDASLSAAEIAERVELSQSPCWRRIHRLQEDGVIERTVALLST
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHH
QKLGLSMTVFVEVKLSGHGRRYLAEFEEAIIGHPEVLECYTMAGGMDFMLKVVAQDIASY
HHCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
ERFLRDHLLQLPHVHEAHSNIAMSTVKRTTELPLD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQPKLSPIDRKILRLLQHDASLSAAEIAERVELSQSPCWRRIHRLQEDGVIERTVALLST
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHH
QKLGLSMTVFVEVKLSGHGRRYLAEFEEAIIGHPEVLECYTMAGGMDFMLKVVAQDIASY
HHCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
ERFLRDHLLQLPHVHEAHSNIAMSTVKRTTELPLD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]