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The map label for this gene is ycfQ [H]

Identifier: 66046158

GI number: 66046158

Start: 3515976

End: 3516602

Strand: Direct

Name: ycfQ [H]

Synonym: Psyr_2927

Alternate gene names: 66046158

Gene position: 3515976-3516602 (Clockwise)

Preceding gene: 66046154

Following gene: 66046159

Centisome position: 57.7

GC content: 61.4

Gene sequence:

>627_bases
ATGGCACAGCTGGGGCGTCCGCGTACATTTGACCGTGATGTAGCGATCACTCAGGCGCTGCATCTGTTTTGGGAGCACGG
CTACGATGCAACCTCCCTCAGCCGGCTCAAGGCAACCATCGGTGGCGGCATCACGGCACCGAGCTTCTACGCAGCGTTTG
GCTCGAAACAGGCTCTGTTCAATGAAGTGATGGAGCGCTACCTCGACACCTACGGCCGGGTCACCGACAGCCTGTTCGAT
ACGAACCTGCCGCCCCGAGACGCGATTGAACTCACCCTTCGCCGCTCCGCGAAAATGCAGTGCGAACCCGGGCATCCGAC
AGGGTGCCTGGTGGCGCTGGGGCTAATGAGCGCCTGCTCGGACGAGAGCAAGGCCATTTCCGAACCTCTTGCGCGGGCGA
GGGATCTGAACCGCACAGGTATCGTGGCCTGTATTCAGCGCGCCGTTGCGGCAGGCGAGTTGCCTGCAACGGTAATACCG
GAAACGCTCGCGGCCGTGTTTGACAGTTTTCTTCTGGGCTTGTCTACACTGGCGCGCGACGGTGTCCCACATGCCACACT
GGACGCTGCAGTGACCCAGGTGATGAGGCTGTGGGACAGCCTGGGCAATGGCGCCGACAAACATTGA

Upstream 100 bases:

>100_bases
TCACTAATATACTGATCGGTACAAATATAGGGAGATGGAGTCAGGTGGTCAACGACTTATGTATCGATTAGTATTTAATT
AATTCCGAAGGAGACTCGAT

Downstream 100 bases:

>100_bases
CCCTGAAGCTCAATCTGGAAGAGGTTCGGGAGGCGTCGACGACGCCAGACTCTTTGCACTGATTTTTTTGGAGAACACCA
TGCTTCGCGCGTTTGAAAAA

Product: regulatory protein, TetR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MAQLGRPRTFDRDVAITQALHLFWEHGYDATSLSRLKATIGGGITAPSFYAAFGSKQALFNEVMERYLDTYGRVTDSLFD
TNLPPRDAIELTLRRSAKMQCEPGHPTGCLVALGLMSACSDESKAISEPLARARDLNRTGIVACIQRAVAAGELPATVIP
ETLAAVFDSFLLGLSTLARDGVPHATLDAAVTQVMRLWDSLGNGADKH

Sequences:

>Translated_208_residues
MAQLGRPRTFDRDVAITQALHLFWEHGYDATSLSRLKATIGGGITAPSFYAAFGSKQALFNEVMERYLDTYGRVTDSLFD
TNLPPRDAIELTLRRSAKMQCEPGHPTGCLVALGLMSACSDESKAISEPLARARDLNRTGIVACIQRAVAAGELPATVIP
ETLAAVFDSFLLGLSTLARDGVPHATLDAAVTQVMRLWDSLGNGADKH
>Mature_207_residues
AQLGRPRTFDRDVAITQALHLFWEHGYDATSLSRLKATIGGGITAPSFYAAFGSKQALFNEVMERYLDTYGRVTDSLFDT
NLPPRDAIELTLRRSAKMQCEPGHPTGCLVALGLMSACSDESKAISEPLARARDLNRTGIVACIQRAVAAGELPATVIPE
TLAAVFDSFLLGLSTLARDGVPHATLDAAVTQVMRLWDSLGNGADKH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=198, Percent_Identity=30.3030303030303, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI87082397, Length=113, Percent_Identity=34.5132743362832, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22406; Mature: 22275

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQLGRPRTFDRDVAITQALHLFWEHGYDATSLSRLKATIGGGITAPSFYAAFGSKQALF
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHH
NEVMERYLDTYGRVTDSLFDTNLPPRDAIELTLRRSAKMQCEPGHPTGCLVALGLMSACS
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
DESKAISEPLARARDLNRTGIVACIQRAVAAGELPATVIPETLAAVFDSFLLGLSTLARD
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GVPHATLDAAVTQVMRLWDSLGNGADKH
CCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AQLGRPRTFDRDVAITQALHLFWEHGYDATSLSRLKATIGGGITAPSFYAAFGSKQALF
CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHH
NEVMERYLDTYGRVTDSLFDTNLPPRDAIELTLRRSAKMQCEPGHPTGCLVALGLMSACS
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
DESKAISEPLARARDLNRTGIVACIQRAVAAGELPATVIPETLAAVFDSFLLGLSTLARD
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GVPHATLDAAVTQVMRLWDSLGNGADKH
CCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]