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The map label for this gene is xylH [H]

Identifier: 66046117

GI number: 66046117

Start: 3462968

End: 3464104

Strand: Direct

Name: xylH [H]

Synonym: Psyr_2886

Alternate gene names: 66046117

Gene position: 3462968-3464104 (Clockwise)

Preceding gene: 66046116

Following gene: 66046125

Centisome position: 56.83

GC content: 62.27

Gene sequence:

>1137_bases
ATGAACCAGGTCAAACAATTCTTTACCCGCTACAAAATGCTCGCGCTGGTGATTGCCATCGCCGTTATCTGGCTGTTCTT
CAGCTGGCAGACCGAGGGCGGCTTCCTCACCCCGCGCAACTTGTCCAACCTGCTGCGCCAGATGTCCATTACCGGGATTC
TGGCCTGCGGCATGGTGCTGGTGATCATCAGCGGCGAGATTGACCTGTCGGTAGGCTCATTGCTTGGCCTGCTCGGTGGC
CTGGCGGCGATTCTGGATGTCGTTTACCACGTCCCGCTACTGGCAAACCTGAGTGTGGTGGCCCTGTGCGGCCTGATGAT
CGGCCTGGCCAACGGCTATATGACCGCCTACCTGCGGATCCCCTCGTTCATCGTCGGGCTGGGTGGCATGCTGGCGTTTC
GCGGCGTTCTGCTGGGGATCACTGGCGGCACGACCATCGCCCCGGTGTCGCCGTCGCTGGTCTATATCGGCCAGGGCTAT
CTGCCACATGCGGTCGGCACCGGGCTCGGGATTCTGCTGCTGGCGCTGACGCTGTTCCTGACCTGGAAACAACGGCGCAA
CAGAGCGCTGCACGGCCTGGCAGCGCATTCGCTGATTCGTGATGTGTTGCGTGTGGTGTTGATCGGCGCCGTGCTGGGCG
GCTTTGTCTATGTGCTCAACAGCTACGACGGAATCCCTGTTCCAGTGTTGCTGTTGCTGGTCCTGCTCGGCGTATTCAGC
TACGTCACCAGCCAGACGGTATTCGGACGCCGCGTCTACGCCGTCGGCAGCAACATGGAGGCCACGCGCCTGTCCGGCAT
CAACGTACAGGCCGTGAAGCTATGGATCTTCGGCATCATGGGCGTGATGTGCGCGTTCGCCGGGCTGGTCAATACAGCAC
GCCTGGCCGCCGGCTCACCCTCGGCAGGCAACATGGGCGAACTCGACGCCATCGCCGCATGCTTCATCGGCGGCACATCG
ATGCGCGGTGGTTCAGGCACTGTCTACGGCGCCCTGCTCGGCGCACTGGTGATTACCAGTCTCGACAACGGCATGTCGAT
GCTCGACGTCGACAGTTACTGGCAGATGATCGTCAAGGGCGGCATTCTGGTGCTGGCGGTATGGGTGGACGTGAGTACCC
GCGCCGGGCGGCGCTGA

Upstream 100 bases:

>100_bases
CGGCGACTTCATCAACCATGACCTGACTCAGGAGCAGGTCCTCGCCGCTGCACTCAGCCACTCCGATGCCCCTCACAATA
ATGCCCGGAAGACCGCGTAG

Downstream 100 bases:

>100_bases
TCGCTGCCCGACACGCAAGCTGACAGCGCGCGATCAAGCCGGTGTGGCCGCTATCGCTTCGACCTCGATCAACGCGCCAG
GCAATGGCAGCGCCACCACC

Product: inner-membrane translocator

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MNQVKQFFTRYKMLALVIAIAVIWLFFSWQTEGGFLTPRNLSNLLRQMSITGILACGMVLVIISGEIDLSVGSLLGLLGG
LAAILDVVYHVPLLANLSVVALCGLMIGLANGYMTAYLRIPSFIVGLGGMLAFRGVLLGITGGTTIAPVSPSLVYIGQGY
LPHAVGTGLGILLLALTLFLTWKQRRNRALHGLAAHSLIRDVLRVVLIGAVLGGFVYVLNSYDGIPVPVLLLLVLLGVFS
YVTSQTVFGRRVYAVGSNMEATRLSGINVQAVKLWIFGIMGVMCAFAGLVNTARLAAGSPSAGNMGELDAIAACFIGGTS
MRGGSGTVYGALLGALVITSLDNGMSMLDVDSYWQMIVKGGILVLAVWVDVSTRAGRR

Sequences:

>Translated_378_residues
MNQVKQFFTRYKMLALVIAIAVIWLFFSWQTEGGFLTPRNLSNLLRQMSITGILACGMVLVIISGEIDLSVGSLLGLLGG
LAAILDVVYHVPLLANLSVVALCGLMIGLANGYMTAYLRIPSFIVGLGGMLAFRGVLLGITGGTTIAPVSPSLVYIGQGY
LPHAVGTGLGILLLALTLFLTWKQRRNRALHGLAAHSLIRDVLRVVLIGAVLGGFVYVLNSYDGIPVPVLLLLVLLGVFS
YVTSQTVFGRRVYAVGSNMEATRLSGINVQAVKLWIFGIMGVMCAFAGLVNTARLAAGSPSAGNMGELDAIAACFIGGTS
MRGGSGTVYGALLGALVITSLDNGMSMLDVDSYWQMIVKGGILVLAVWVDVSTRAGRR
>Mature_378_residues
MNQVKQFFTRYKMLALVIAIAVIWLFFSWQTEGGFLTPRNLSNLLRQMSITGILACGMVLVIISGEIDLSVGSLLGLLGG
LAAILDVVYHVPLLANLSVVALCGLMIGLANGYMTAYLRIPSFIVGLGGMLAFRGVLLGITGGTTIAPVSPSLVYIGQGY
LPHAVGTGLGILLLALTLFLTWKQRRNRALHGLAAHSLIRDVLRVVLIGAVLGGFVYVLNSYDGIPVPVLLLLVLLGVFS
YVTSQTVFGRRVYAVGSNMEATRLSGINVQAVKLWIFGIMGVMCAFAGLVNTARLAAGSPSAGNMGELDAIAACFIGGTS
MRGGSGTVYGALLGALVITSLDNGMSMLDVDSYWQMIVKGGILVLAVWVDVSTRAGRR

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=367, Percent_Identity=53.6784741144414, Blast_Score=338, Evalue=3e-94,
Organism=Escherichia coli, GI1788896, Length=381, Percent_Identity=32.8083989501312, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1790191, Length=147, Percent_Identity=45.578231292517, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1790524, Length=147, Percent_Identity=41.4965986394558, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI145693152, Length=205, Percent_Identity=30.7317073170732, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1788471, Length=135, Percent_Identity=40.7407407407407, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1787793, Length=134, Percent_Identity=33.5820895522388, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI145693214, Length=152, Percent_Identity=36.1842105263158, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082395, Length=137, Percent_Identity=33.5766423357664, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 39886; Mature: 39886

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCEEEEEEHHHCCCCCCC
>Mature Secondary Structure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CCEEEEEEHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]