| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is yedK [H]
Identifier: 66045999
GI number: 66045999
Start: 3350542
End: 3351231
Strand: Direct
Name: yedK [H]
Synonym: Psyr_2763
Alternate gene names: 66045999
Gene position: 3350542-3351231 (Clockwise)
Preceding gene: 66045996
Following gene: 66046012
Centisome position: 54.98
GC content: 56.67
Gene sequence:
>690_bases ATGTGCGGACGCTACTCGATCTATGAATCCATGGACCATTACCTAAAAGAGCTTGCGCCAGAGCAGCTGGTTATCAATGG CTATGACCTCTGGCCCATTGAGCGTTACAACGTTGCTCCGACGACTCGCGTTGAGATCATCCGACCGACGGAGACCGGCC TGAGTGTCGACAAGGTTCGCTGGGGATGGGCTCCGTTCTGGGCCCAGGGGAAACGTCCGGCCCCCATTAATGCACGCGTC GAAACGGTGATGACTGGAAAGTTCTTCAAAGAGTTGTGGCCGCACGGCCGTGCTCTCGCACCTGCAAATGGCTGGTTTGA ATGGGTTAAGAATCCTGATGACCCCAAGAAAAAGCAGCCTTACTTCATCCGACTCAAAAGCCAAAAGCCGATGTTTTTCG CAGCGCTCGCGCAAGTTCATGCTGGGCTGCAACCTCACGAAGGCGACGGGTTCGTGATTATTACTGCGGCCAGCGATCAG GGAATGGTCGACATACACGACCGGCGCCCATTGGTCCTCAGCCCCGAACTGGCGCGCGAGTGGACAGACCCGTCCACTGC CCCATCGCGCGCCGCCGAGATAGCTCGGGAATGCTGTACTCCAGTCGATGAGTTTGAGTGGTATACGGTTGGCAAGGCCG TGGGTAACGTCCGGAACCAAGGGGCGGAACTGATAGAGGAAGTCGAATAA
Upstream 100 bases:
>100_bases GTGAGTGATTAACTGTATGCATATACAGTTAACTCTTTGCCCTTACCGTGGTCAATCGTAGAGACGGGCATTTTCGACGA GTGACATTACGGGTGACATC
Downstream 100 bases:
>100_bases ATTCATACGCCCAAGGCAGCCCAAGCATTTAAACCTTGCGTATCCCGAACTGCGCGGCCTTGACCGTCGAGTCCTGCGGC ACGCCTGCAGCCAGGTATAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 229; Mature: 229
Protein sequence:
>229_residues MCGRYSIYESMDHYLKELAPEQLVINGYDLWPIERYNVAPTTRVEIIRPTETGLSVDKVRWGWAPFWAQGKRPAPINARV ETVMTGKFFKELWPHGRALAPANGWFEWVKNPDDPKKKQPYFIRLKSQKPMFFAALAQVHAGLQPHEGDGFVIITAASDQ GMVDIHDRRPLVLSPELAREWTDPSTAPSRAAEIARECCTPVDEFEWYTVGKAVGNVRNQGAELIEEVE
Sequences:
>Translated_229_residues MCGRYSIYESMDHYLKELAPEQLVINGYDLWPIERYNVAPTTRVEIIRPTETGLSVDKVRWGWAPFWAQGKRPAPINARV ETVMTGKFFKELWPHGRALAPANGWFEWVKNPDDPKKKQPYFIRLKSQKPMFFAALAQVHAGLQPHEGDGFVIITAASDQ GMVDIHDRRPLVLSPELAREWTDPSTAPSRAAEIARECCTPVDEFEWYTVGKAVGNVRNQGAELIEEVE >Mature_229_residues MCGRYSIYESMDHYLKELAPEQLVINGYDLWPIERYNVAPTTRVEIIRPTETGLSVDKVRWGWAPFWAQGKRPAPINARV ETVMTGKFFKELWPHGRALAPANGWFEWVKNPDDPKKKQPYFIRLKSQKPMFFAALAQVHAGLQPHEGDGFVIITAASDQ GMVDIHDRRPLVLSPELAREWTDPSTAPSRAAEIARECCTPVDEFEWYTVGKAVGNVRNQGAELIEEVE
Specific function: Unknown
COG id: COG2135
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To yeast YMR114C [H]
Homologues:
Organism=Escherichia coli, GI48994894, Length=228, Percent_Identity=49.5614035087719, Blast_Score=210, Evalue=8e-56, Organism=Saccharomyces cerevisiae, GI6323761, Length=199, Percent_Identity=29.6482412060301, Blast_Score=75, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003738 [H]
Pfam domain/function: PF02586 DUF159 [H]
EC number: NA
Molecular weight: Translated: 26066; Mature: 26066
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCGRYSIYESMDHYLKELAPEQLVINGYDLWPIERYNVAPTTRVEIIRPTETGLSVDKVR CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHEE WGWAPFWAQGKRPAPINARVETVMTGKFFKELWPHGRALAPANGWFEWVKNPDDPKKKQP CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHHCCCCCCCCCCC YFIRLKSQKPMFFAALAQVHAGLQPHEGDGFVIITAASDQGMVDIHDRRPLVLSPELARE EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEECHHHHHH WTDPSTAPSRAAEIARECCTPVDEFEWYTVGKAVGNVRNQGAELIEEVE CCCCCCCHHHHHHHHHHHCCCCHHCCEEEHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MCGRYSIYESMDHYLKELAPEQLVINGYDLWPIERYNVAPTTRVEIIRPTETGLSVDKVR CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHEE WGWAPFWAQGKRPAPINARVETVMTGKFFKELWPHGRALAPANGWFEWVKNPDDPKKKQP CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHHCCCCCCCCCCC YFIRLKSQKPMFFAALAQVHAGLQPHEGDGFVIITAASDQGMVDIHDRRPLVLSPELARE EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEECHHHHHH WTDPSTAPSRAAEIARECCTPVDEFEWYTVGKAVGNVRNQGAELIEEVE CCCCCCCHHHHHHHHHHHCCCCHHCCEEEHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8371104; 9278503 [H]