Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 66045987

GI number: 66045987

Start: 3339505

End: 3340470

Strand: Reverse

Name: xerC [H]

Synonym: Psyr_2751

Alternate gene names: 66045987

Gene position: 3340470-3339505 (Counterclockwise)

Preceding gene: 66045989

Following gene: 66045986

Centisome position: 54.82

GC content: 60.46

Gene sequence:

>966_bases
ATGCCGCACGACCCTCACACCGACCAGGACGCACGCATCGTCAGCCAGCCTTCGCTGCCCGACGTCAACAAGCCGCTGCG
CCTTTACCTCGATCGCCTGGCACCTTCAAGCCGCCTGACCATGACCTACGTTCTGCAGGATGCAGCAGACCGGCTGGGCA
TGGCTGACGTCGATATTCATGATATTCCCTGGCACACCCTGCAACCTGGCCACGTTACCGCGCTGGTCGCAACGCTGCGT
CAGGATGACTACGCGCCCAACACCACCTCGCTGTATGTGAACGCCATTCGCGGCGTGATGAACGAAGCCTGGCGACACGA
CCTGATCAGCCACGATCAACTGCTGAAAATCCGCTCGATCAAACCGGTCAGCGGCACGCGATTGGTCAAGGGCCGCAACA
TCCGTCGCACGCTGATTCGTGAGCTGATGGAAGCCTGTGCTGCCGACCCCAGGCCGCAAGGGCGTCGCGATGCCGCGATC
ATTGCCATTCTGTATGGCTCGGGGATGCGCAAGTCCGAGTCGGTCAACCTCGACCTTTCCCAGATCGACTTCGCCGAGCG
CAGCCTGCGGGTGCTGGGCAAAGGCAACAAGCAATTGATCAAATACGCCCCCGAATGGGCCTTCAAGGCGCTGAACGACT
GGCTGGCGTTGCGCCGGTCGTGCCTCCCGCCGGGGCAGGGCGATGACCCGTTCTTGTTCAACCGGATTCGCCGTGGCAGC
CATATCACCCGCGACAGAATCACCAAGCACGCCATTTACTTCATCGCCAAGCAGCGCGGGCGGCAGGTGGGTGTGAACAT
CATGCCCCATGATTTTCGACGTTCGTTCATTACCCGGGTGATCGAAGAGTTCGATCTGTCGATTGCCCAGAAGCTCGCGC
ATCACACGCACATCTCGACCACCGCCAGTTACGACATGCGCAGTGACAACGAGCGGCGCAATGTTGTGGACGGGTTTGAT
CTTTGA

Upstream 100 bases:

>100_bases
GTCGCACCAGAGCCCTCGTGCTAAAGTCGCTCGCTTGAATGCGAATGAAAAGCGCCGTGGCTGTTGGCACGCGCTTGCAC
CAGAAAAGGCGTCGCTCCCT

Downstream 100 bases:

>100_bases
GCAAAAAAAAGCCACCTCGCGTAAACGGGGTGGCTTAAAAGATCTAACCAAAGGAGTGATGAAGCAGAGCAGAGATTCAC
CGGCATCGCGACGCGGATTC

Product: Phage integrase:Phage integrase, N-terminal SAM-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MPHDPHTDQDARIVSQPSLPDVNKPLRLYLDRLAPSSRLTMTYVLQDAADRLGMADVDIHDIPWHTLQPGHVTALVATLR
QDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLVKGRNIRRTLIRELMEACAADPRPQGRRDAAI
IAILYGSGMRKSESVNLDLSQIDFAERSLRVLGKGNKQLIKYAPEWAFKALNDWLALRRSCLPPGQGDDPFLFNRIRRGS
HITRDRITKHAIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEEFDLSIAQKLAHHTHISTTASYDMRSDNERRNVVDGFD
L

Sequences:

>Translated_321_residues
MPHDPHTDQDARIVSQPSLPDVNKPLRLYLDRLAPSSRLTMTYVLQDAADRLGMADVDIHDIPWHTLQPGHVTALVATLR
QDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLVKGRNIRRTLIRELMEACAADPRPQGRRDAAI
IAILYGSGMRKSESVNLDLSQIDFAERSLRVLGKGNKQLIKYAPEWAFKALNDWLALRRSCLPPGQGDDPFLFNRIRRGS
HITRDRITKHAIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEEFDLSIAQKLAHHTHISTTASYDMRSDNERRNVVDGFD
L
>Mature_320_residues
PHDPHTDQDARIVSQPSLPDVNKPLRLYLDRLAPSSRLTMTYVLQDAADRLGMADVDIHDIPWHTLQPGHVTALVATLRQ
DDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVSGTRLVKGRNIRRTLIRELMEACAADPRPQGRRDAAII
AILYGSGMRKSESVNLDLSQIDFAERSLRVLGKGNKQLIKYAPEWAFKALNDWLALRRSCLPPGQGDDPFLFNRIRRGSH
ITRDRITKHAIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEEFDLSIAQKLAHHTHISTTASYDMRSDNERRNVVDGFDL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=243, Percent_Identity=27.5720164609054, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790244, Length=160, Percent_Identity=31.875, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36649; Mature: 36518

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHDPHTDQDARIVSQPSLPDVNKPLRLYLDRLAPSSRLTMTYVLQDAADRLGMADVDIH
CCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC
DIPWHTLQPGHVTALVATLRQDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSI
CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCC
KPVSGTRLVKGRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLS
CCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHH
QIDFAERSLRVLGKGNKQLIKYAPEWAFKALNDWLALRRSCLPPGQGDDPFLFNRIRRGS
HHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
HITRDRITKHAIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEEFDLSIAQKLAHHTHIST
CCHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TASYDMRSDNERRNVVDGFDL
CCCCCCCCCCCHHCCCCCCCC
>Mature Secondary Structure 
PHDPHTDQDARIVSQPSLPDVNKPLRLYLDRLAPSSRLTMTYVLQDAADRLGMADVDIH
CCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC
DIPWHTLQPGHVTALVATLRQDDYAPNTTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSI
CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCC
KPVSGTRLVKGRNIRRTLIRELMEACAADPRPQGRRDAAIIAILYGSGMRKSESVNLDLS
CCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHH
QIDFAERSLRVLGKGNKQLIKYAPEWAFKALNDWLALRRSCLPPGQGDDPFLFNRIRRGS
HHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
HITRDRITKHAIYFIAKQRGRQVGVNIMPHDFRRSFITRVIEEFDLSIAQKLAHHTHIST
CCHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TASYDMRSDNERRNVVDGFDL
CCCCCCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA