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The map label for this gene is nocR [H]

Identifier: 66045772

GI number: 66045772

Start: 2950688

End: 2951677

Strand: Direct

Name: nocR [H]

Synonym: Psyr_2536

Alternate gene names: 66045772

Gene position: 2950688-2951677 (Clockwise)

Preceding gene: 66045771

Following gene: 66045773

Centisome position: 48.42

GC content: 61.62

Gene sequence:

>990_bases
GTGCTTCCTCATCGGCGGTGTATCGATCAAGGCATGCTTATGGATTTGCGTCAGCTCGAAGCCTTCGCGGCGGTCATGTC
GGCAGGCAGTGTCACGGCGGCAGGGAAAATGCTCGGCCGGTCTCAACCCTCGGTCACCCGGGCCATTCAGGAACTTGAAC
AGGAGCTGGGCTTTGCGTTGTTCGAACGCAGCGGGCCTAAGGTCACGCCTACCCACAAGGCGTTCATGATGTATGGCGAG
GTGGAGAGTGCGCTGCTGGGTGTGCGCAACATCCGCCAGCGTGCGCAGCACATTGCCCAGGAGGAGAACCACCAGATCAA
GCTGGTGGCGATCTCGGCCCTGGCGGCCGGCCTGCTGCCCACAGCCTTGTCGCGGCTGCCCGAGCACCTGCGTCCGCAAC
AGATTCAGTTGCAGAGCATGTCTCCGGAGAACGTGGTTCAGGCCGTCCTGTCGAAAACCATGGACCTGGGAGCGGTCAGC
CTGCCGCTGGAGCATCGTGGTCTGGAAATCCACTGGATCGGCGAGGCGCCTTGTGTGGCGGTATTGCCCGCCGATTCAGC
GCTGGCCGCTCATGAGGTGCTGTCGATGGAGCTGCTGCGTCAGCAGACGCTGATCACCATGGCCAACCCGTATCGCTTTC
GTCGACGCATCGACAAGGCGTTTCAGGAGGCGGGTGGTCAGCCGCCGCGCATGCTGGACACCAATACGTCGCTGATTGCC
ATGCAGATGGCCAGGGTCGGGCTGGGCATTGCGCTGGTCGATCCGTTCACGGCCATGGGCGTGCCGGTGCAAGGCGTGGT
CGTCAGACCGATCGCCTGCAACATTCCGTTTTTCTTCGGGCTGATTTCCGCCTTCGCCAGCCCGTTGTCGGATGTGGCGC
GCGCGCTGATCGATGAAATTGCCGACAGCGCAAAAATCCTCTTGCCGGAAATGATCATGCACGAAGCCAGCGCGCACGAT
GCCCTGTTACAGAGCATTTATGCCGAGTAA

Upstream 100 bases:

>100_bases
AGGGCCGAAACCGGGTAATGATCGCCGGATGAGGTGCTTGCTCACGCCAGGCGCTACCAGCGTGTAGACTTTCGCGCTTT
GAACCAGGGAGCACTGTGTC

Downstream 100 bases:

>100_bases
GAGGGCAATGCATACAGCCTTCAGGCCCGGGCGTTGGTAGCGCCAGTCGTGGTGCGCAAGACTGAAGATCGGACGCAGCT
CGCCCATGAATACCCTGGGT

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLPHRRCIDQGMLMDLRQLEAFAAVMSAGSVTAAGKMLGRSQPSVTRAIQELEQELGFALFERSGPKVTPTHKAFMMYGE
VESALLGVRNIRQRAQHIAQEENHQIKLVAISALAAGLLPTALSRLPEHLRPQQIQLQSMSPENVVQAVLSKTMDLGAVS
LPLEHRGLEIHWIGEAPCVAVLPADSALAAHEVLSMELLRQQTLITMANPYRFRRRIDKAFQEAGGQPPRMLDTNTSLIA
MQMARVGLGIALVDPFTAMGVPVQGVVVRPIACNIPFFFGLISAFASPLSDVARALIDEIADSAKILLPEMIMHEASAHD
ALLQSIYAE

Sequences:

>Translated_329_residues
MLPHRRCIDQGMLMDLRQLEAFAAVMSAGSVTAAGKMLGRSQPSVTRAIQELEQELGFALFERSGPKVTPTHKAFMMYGE
VESALLGVRNIRQRAQHIAQEENHQIKLVAISALAAGLLPTALSRLPEHLRPQQIQLQSMSPENVVQAVLSKTMDLGAVS
LPLEHRGLEIHWIGEAPCVAVLPADSALAAHEVLSMELLRQQTLITMANPYRFRRRIDKAFQEAGGQPPRMLDTNTSLIA
MQMARVGLGIALVDPFTAMGVPVQGVVVRPIACNIPFFFGLISAFASPLSDVARALIDEIADSAKILLPEMIMHEASAHD
ALLQSIYAE
>Mature_329_residues
MLPHRRCIDQGMLMDLRQLEAFAAVMSAGSVTAAGKMLGRSQPSVTRAIQELEQELGFALFERSGPKVTPTHKAFMMYGE
VESALLGVRNIRQRAQHIAQEENHQIKLVAISALAAGLLPTALSRLPEHLRPQQIQLQSMSPENVVQAVLSKTMDLGAVS
LPLEHRGLEIHWIGEAPCVAVLPADSALAAHEVLSMELLRQQTLITMANPYRFRRRIDKAFQEAGGQPPRMLDTNTSLIA
MQMARVGLGIALVDPFTAMGVPVQGVVVRPIACNIPFFFGLISAFASPLSDVARALIDEIADSAKILLPEMIMHEASAHD
ALLQSIYAE

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=319, Percent_Identity=26.6457680250784, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367136, Length=267, Percent_Identity=25.0936329588015, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788481, Length=152, Percent_Identity=34.2105263157895, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788887, Length=269, Percent_Identity=27.1375464684015, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI157672245, Length=230, Percent_Identity=24.3478260869565, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788748, Length=308, Percent_Identity=25, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=24.0963855421687, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35861; Mature: 35861

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPHRRCIDQGMLMDLRQLEAFAAVMSAGSVTAAGKMLGRSQPSVTRAIQELEQELGFAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FERSGPKVTPTHKAFMMYGEVESALLGVRNIRQRAQHIAQEENHQIKLVAISALAAGLLP
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHH
TALSRLPEHLRPQQIQLQSMSPENVVQAVLSKTMDLGAVSLPLEHRGLEIHWIGEAPCVA
HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCEECCHHHCCEEEEEECCCCEEE
VLPADSALAAHEVLSMELLRQQTLITMANPYRFRRRIDKAFQEAGGQPPRMLDTNTSLIA
EECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEECCCHHHHH
MQMARVGLGIALVDPFTAMGVPVQGVVVRPIACNIPFFFGLISAFASPLSDVARALIDEI
HHHHHHCCCEEEECCHHHCCCCCCCEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
ADSAKILLPEMIMHEASAHDALLQSIYAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLPHRRCIDQGMLMDLRQLEAFAAVMSAGSVTAAGKMLGRSQPSVTRAIQELEQELGFAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FERSGPKVTPTHKAFMMYGEVESALLGVRNIRQRAQHIAQEENHQIKLVAISALAAGLLP
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHH
TALSRLPEHLRPQQIQLQSMSPENVVQAVLSKTMDLGAVSLPLEHRGLEIHWIGEAPCVA
HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCEECCHHHCCEEEEEECCCCEEE
VLPADSALAAHEVLSMELLRQQTLITMANPYRFRRRIDKAFQEAGGQPPRMLDTNTSLIA
EECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEECCCHHHHH
MQMARVGLGIALVDPFTAMGVPVQGVVVRPIACNIPFFFGLISAFASPLSDVARALIDEI
HHHHHHCCCEEEECCHHHCCCCCCCEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
ADSAKILLPEMIMHEASAHDALLQSIYAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]