Click here to switch to the map view.

The map label for this gene is 66045614

Identifier: 66045614

GI number: 66045614

Start: 2757676

End: 2758458

Strand: Direct

Name: 66045614

Synonym: Psyr_2378

Alternate gene names: NA

Gene position: 2757676-2758458 (Clockwise)

Preceding gene: 66045609

Following gene: 66045616

Centisome position: 45.25

GC content: 60.54

Gene sequence:

>783_bases
ATGACTGAAGACCTGAATTGCCAAGCCGTTCCTGGAAGCCCTCGCTGGTGGATGAACCGCGTACGTCGCGTGGAAAAAAG
CAGAAGTCGAGGCAGGCCTTCCGTTTCGGCAGAACGGATCATTGCAACTGCCCTGGAGGCGGTCGACGAGGTCGGCGCGC
AGGCGTTCAATATGCGCATGCTTGCGGAGCGGCTCGAGTCCGGTACAGCGACGCTCTATCGGCATTTCGCCAGCAAGGAC
GAGATACTGGTTTACGTGGTCGATAGCGTGCTGGGCGAAATGAGTGCGGATCAATCCGATGCCGCTGAAGGAGCACCGCA
GGAGCAGGGCGGCGATGAGCATGCCTGGCAAAAAGCCTGCGCATCAGGCGCCGAACGCCTTTATCGCGTATTGCGCAAGC
ATCCGGGTATCTTGCCGCTGTTGGTGTCACAGATACCGATCGGACCCAACGGGCTCAAGCGCCGCGAGCAGGGCATTGCG
CTGTTTCTGGCCAACGGGTTTCCTGCCGAACTGGCTGCCCGCGCCTACACGTCGGTCGCTCACTATGTGCTGGGTTTCGC
CATACAGCAGCATTCAAACGTTGCAAGCGAAGCCACGGACGGCGAGGACCTGGTCGAGTTTTTCTCCGCACTGGATGCGA
GTGAATACCCGGCGATTGCGGCTGCCGGACGCCATTTACCTGGCGTTTCCGTGGAGGATGAGTTCAGGTTCGGCTTGCAG
CTCATCATCGACGGGCTGGAACTTGCGCTTGCCGGGCTCCAGCAAGGCACCGGCGAGCGCTGA

Upstream 100 bases:

>100_bases
ATCAGATCATTCACAAGGCAGCCAAGCAGACGGACGGTGATCCAGGTTGGCGCATCACCGGGGTGGCGGTAATCGATCAC
GTTGGGCTTATAATCTGCAA

Downstream 100 bases:

>100_bases
AGCAATGACTGTACTGTTCAGCGAGGATGCGACGCCAGCGCCGAGCTGCCCAGCCGGGTCAGTCCGTAAAGCGCAGCACC
GACCGCCAGCATGATGCCTG

Product: transcriptional repressor TetR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTEDLNCQAVPGSPRWWMNRVRRVEKSRSRGRPSVSAERIIATALEAVDEVGAQAFNMRMLAERLESGTATLYRHFASKD
EILVYVVDSVLGEMSADQSDAAEGAPQEQGGDEHAWQKACASGAERLYRVLRKHPGILPLLVSQIPIGPNGLKRREQGIA
LFLANGFPAELAARAYTSVAHYVLGFAIQQHSNVASEATDGEDLVEFFSALDASEYPAIAAAGRHLPGVSVEDEFRFGLQ
LIIDGLELALAGLQQGTGER

Sequences:

>Translated_260_residues
MTEDLNCQAVPGSPRWWMNRVRRVEKSRSRGRPSVSAERIIATALEAVDEVGAQAFNMRMLAERLESGTATLYRHFASKD
EILVYVVDSVLGEMSADQSDAAEGAPQEQGGDEHAWQKACASGAERLYRVLRKHPGILPLLVSQIPIGPNGLKRREQGIA
LFLANGFPAELAARAYTSVAHYVLGFAIQQHSNVASEATDGEDLVEFFSALDASEYPAIAAAGRHLPGVSVEDEFRFGLQ
LIIDGLELALAGLQQGTGER
>Mature_259_residues
TEDLNCQAVPGSPRWWMNRVRRVEKSRSRGRPSVSAERIIATALEAVDEVGAQAFNMRMLAERLESGTATLYRHFASKDE
ILVYVVDSVLGEMSADQSDAAEGAPQEQGGDEHAWQKACASGAERLYRVLRKHPGILPLLVSQIPIGPNGLKRREQGIAL
FLANGFPAELAARAYTSVAHYVLGFAIQQHSNVASEATDGEDLVEFFSALDASEYPAIAAAGRHLPGVSVEDEFRFGLQL
IIDGLELALAGLQQGTGER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR004111
- InterPro:   IPR001647 [H]

Pfam domain/function: PF02909 TetR_C; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 28217; Mature: 28086

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEDLNCQAVPGSPRWWMNRVRRVEKSRSRGRPSVSAERIIATALEAVDEVGAQAFNMRM
CCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAERLESGTATLYRHFASKDEILVYVVDSVLGEMSADQSDAAEGAPQEQGGDEHAWQKAC
HHHHHHCCHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHH
ASGAERLYRVLRKHPGILPLLVSQIPIGPNGLKRREQGIALFLANGFPAELAARAYTSVA
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHH
HYVLGFAIQQHSNVASEATDGEDLVEFFSALDASEYPAIAAAGRHLPGVSVEDEFRFGLQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHH
LIIDGLELALAGLQQGTGER
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TEDLNCQAVPGSPRWWMNRVRRVEKSRSRGRPSVSAERIIATALEAVDEVGAQAFNMRM
CCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAERLESGTATLYRHFASKDEILVYVVDSVLGEMSADQSDAAEGAPQEQGGDEHAWQKAC
HHHHHHCCHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHH
ASGAERLYRVLRKHPGILPLLVSQIPIGPNGLKRREQGIALFLANGFPAELAARAYTSVA
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHH
HYVLGFAIQQHSNVASEATDGEDLVEFFSALDASEYPAIAAAGRHLPGVSVEDEFRFGLQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHH
LIIDGLELALAGLQQGTGER
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]