Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698

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The map label for this gene is yyaJ [H]

Identifier: 66045544

GI number: 66045544

Start: 2678583

End: 2680001

Strand: Reverse

Name: yyaJ [H]

Synonym: Psyr_2304

Alternate gene names: 66045544

Gene position: 2680001-2678583 (Counterclockwise)

Preceding gene: 66045547

Following gene: 66045543

Centisome position: 43.98

GC content: 60.39

Gene sequence:

>1419_bases
ATGACCTCATTACCCCATGCCGAGGCAGCCGCGAACGAGCCGTTGCGGGCAGCGTACATCTCGGCGCGTATTGACCGACT
GCCTGCGGTCGCGACCATCTGGCGACTGGTCGCCCTGCTGTCCATCGCCGGCTTTTTCGAGCTCTACGACCTGTTCCAGA
CCGCCTACATCAGTCCCGGCCTGATTCGCGACGGGATCTTCGCCACCGGCAGTCAGGGTCTGTTCGGCTTTTCCGATCAG
GCAGCCTTTGCTTCGGCAACCTTTCTGGGACTGTTTTTCGGAGCCAGCCTCGTCAGCCCGATTGCCGATCGTTACGGACG
CCGCGCGATCTTCACCTTCGCGCTGATCTGGTACACCGTTGCCACCGTGATCATGGGCCTGCAGACCTCTGCGCTGGGCG
TGATAGGCATGCGCTTCGTCGTGGGTATCGGCCTGGGGGTCGAGTTGGTCACCATCGACACCTACCTGTCGGAACTGGTG
CCCAAGCGCATACGCAGTTCGGCGTTCGCCTTTGCCTTCTTCATTCAGTTTCTGTCAGTGCCCAGCGTCGCGCTGATGTC
ATGGTGGCTGGTGCCCCAGGACCCTTTCGGTTTTTCCGGCTGGCGCTGGGTAGTGATCAGCAGTGCAGTCTTCGCCCTGT
TCGTCTGGTGGCTGCGCTCGGCGCTGCCGGAATCGCCGCGCTGGCTGGCACAGAAGGGACGCTTCGATGAAGCCGAGCGC
ATCATGGACGGCATTGAAGCACGCTGTATCAGAGACCACGGCAAGCCCTTGGATGAGCCTGAACCGGAAAACGTAGCGCT
GTCAGGCAACGGTCGATTTGCCGACATGTGGCAGCCACCCTATCGTCGCCGCGCCTTGATGCTGATCGTGTTTCACGTTT
TTCAGGCCATCGGTTTCTTTGGCTTCGGCAACTGGCTGCCTGCCCTGCTCTCGGGTCAGGGCCTGAGCGTCACCCACAGC
CTGGCCTATGCGTTCGTGATTACGCTGGCTTATCCGCTGGGGCCGTTACTGTTCGTGAAGTTTGCCAACCGCTTCGAGAA
CAAATGGCAAATCGTCGGCTCAGCATTGGGCGCGATGATCTTCGGCAGCCTGTTCGCCTTTCAGACCAGCGCGGCAGGAC
TGATTTTCTGCGGGATCATGATCACGTTCTGCAACGCATGGCTGAGCTTCAGCTACCACTCGTATCAGGGTGAGCTGTTC
CCGACCAACATCCGCGCTCGCGCAGTGGGCTTCTGTTACTCGTTCAGCCGACTGTCAACGGTGTTCAGCAGCCTGCTGAT
CGGGATATTTCTCGACCACTTCGGCACGCCGGGCGTACTGGCCTTCATCGTCGGCAGCATGTTGATCGTGATCGTCACCA
TCGGCCGGTTCGGGCCACGCACACGCAATCTTGCGCTGGAGCAGATCGCTCACCGCTGA

Upstream 100 bases:

>100_bases
TTTTCATCTTTTATACCCCGATAACTGCATTAAAAGACCAATGATTACAAATTGTAAGGAGTAGTATTCAGGCCTTAACA
AGAACTCAGGATGGCCATCC

Downstream 100 bases:

>100_bases
CGAGTGCAGGTTGAGTGGGCTCAGGCCTGAGCCCACTCAACATTGGTGACACCGAAGTGCTCGGCGTACGGTTTCGACAC
CCGCGCGACCTTCTCCAAAC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MTSLPHAEAAANEPLRAAYISARIDRLPAVATIWRLVALLSIAGFFELYDLFQTAYISPGLIRDGIFATGSQGLFGFSDQ
AAFASATFLGLFFGASLVSPIADRYGRRAIFTFALIWYTVATVIMGLQTSALGVIGMRFVVGIGLGVELVTIDTYLSELV
PKRIRSSAFAFAFFIQFLSVPSVALMSWWLVPQDPFGFSGWRWVVISSAVFALFVWWLRSALPESPRWLAQKGRFDEAER
IMDGIEARCIRDHGKPLDEPEPENVALSGNGRFADMWQPPYRRRALMLIVFHVFQAIGFFGFGNWLPALLSGQGLSVTHS
LAYAFVITLAYPLGPLLFVKFANRFENKWQIVGSALGAMIFGSLFAFQTSAAGLIFCGIMITFCNAWLSFSYHSYQGELF
PTNIRARAVGFCYSFSRLSTVFSSLLIGIFLDHFGTPGVLAFIVGSMLIVIVTIGRFGPRTRNLALEQIAHR

Sequences:

>Translated_472_residues
MTSLPHAEAAANEPLRAAYISARIDRLPAVATIWRLVALLSIAGFFELYDLFQTAYISPGLIRDGIFATGSQGLFGFSDQ
AAFASATFLGLFFGASLVSPIADRYGRRAIFTFALIWYTVATVIMGLQTSALGVIGMRFVVGIGLGVELVTIDTYLSELV
PKRIRSSAFAFAFFIQFLSVPSVALMSWWLVPQDPFGFSGWRWVVISSAVFALFVWWLRSALPESPRWLAQKGRFDEAER
IMDGIEARCIRDHGKPLDEPEPENVALSGNGRFADMWQPPYRRRALMLIVFHVFQAIGFFGFGNWLPALLSGQGLSVTHS
LAYAFVITLAYPLGPLLFVKFANRFENKWQIVGSALGAMIFGSLFAFQTSAAGLIFCGIMITFCNAWLSFSYHSYQGELF
PTNIRARAVGFCYSFSRLSTVFSSLLIGIFLDHFGTPGVLAFIVGSMLIVIVTIGRFGPRTRNLALEQIAHR
>Mature_471_residues
TSLPHAEAAANEPLRAAYISARIDRLPAVATIWRLVALLSIAGFFELYDLFQTAYISPGLIRDGIFATGSQGLFGFSDQA
AFASATFLGLFFGASLVSPIADRYGRRAIFTFALIWYTVATVIMGLQTSALGVIGMRFVVGIGLGVELVTIDTYLSELVP
KRIRSSAFAFAFFIQFLSVPSVALMSWWLVPQDPFGFSGWRWVVISSAVFALFVWWLRSALPESPRWLAQKGRFDEAERI
MDGIEARCIRDHGKPLDEPEPENVALSGNGRFADMWQPPYRRRALMLIVFHVFQAIGFFGFGNWLPALLSGQGLSVTHSL
AYAFVITLAYPLGPLLFVKFANRFENKWQIVGSALGAMIFGSLFAFQTSAAGLIFCGIMITFCNAWLSFSYHSYQGELFP
TNIRARAVGFCYSFSRLSTVFSSLLIGIFLDHFGTPGVLAFIVGSMLIVIVTIGRFGPRTRNLALEQIAHR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Homo sapiens, GI166064021, Length=404, Percent_Identity=25.990099009901, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI7662270, Length=342, Percent_Identity=21.3450292397661, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI216548223, Length=294, Percent_Identity=21.0884353741497, Blast_Score=69, Evalue=7e-12,
Organism=Escherichia coli, GI1788074, Length=439, Percent_Identity=26.879271070615, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1786229, Length=410, Percent_Identity=28.2926829268293, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1788068, Length=461, Percent_Identity=25.8134490238612, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI87082159, Length=356, Percent_Identity=28.3707865168539, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1790463, Length=496, Percent_Identity=21.9758064516129, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87082404, Length=372, Percent_Identity=23.9247311827957, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789207, Length=416, Percent_Identity=24.5192307692308, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082231, Length=179, Percent_Identity=27.3743016759777, Blast_Score=64, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6320595, Length=155, Percent_Identity=30.3225806451613, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19922616, Length=438, Percent_Identity=26.2557077625571, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24640198, Length=481, Percent_Identity=23.2848232848233, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24640196, Length=481, Percent_Identity=23.2848232848233, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24640200, Length=481, Percent_Identity=23.2848232848233, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR005828 [H]

Pfam domain/function: PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 52211; Mature: 52079

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1 ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLPHAEAAANEPLRAAYISARIDRLPAVATIWRLVALLSIAGFFELYDLFQTAYISPG
CCCCCCCHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LIRDGIFATGSQGLFGFSDQAAFASATFLGLFFGASLVSPIADRYGRRAIFTFALIWYTV
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ATVIMGLQTSALGVIGMRFVVGIGLGVELVTIDTYLSELVPKRIRSSAFAFAFFIQFLSV
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PSVALMSWWLVPQDPFGFSGWRWVVISSAVFALFVWWLRSALPESPRWLAQKGRFDEAER
CHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHH
IMDGIEARCIRDHGKPLDEPEPENVALSGNGRFADMWQPPYRRRALMLIVFHVFQAIGFF
HHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
GFGNWLPALLSGQGLSVTHSLAYAFVITLAYPLGPLLFVKFANRFENKWQIVGSALGAMI
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGSLFAFQTSAAGLIFCGIMITFCNAWLSFSYHSYQGELFPTNIRARAVGFCYSFSRLST
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHH
VFSSLLIGIFLDHFGTPGVLAFIVGSMLIVIVTIGRFGPRTRNLALEQIAHR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TSLPHAEAAANEPLRAAYISARIDRLPAVATIWRLVALLSIAGFFELYDLFQTAYISPG
CCCCCCHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC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HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 8011666; 9384377 [H]