| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is ssuA [H]
Identifier: 66045449
GI number: 66045449
Start: 2567177
End: 2568151
Strand: Reverse
Name: ssuA [H]
Synonym: Psyr_2209
Alternate gene names: 66045449
Gene position: 2568151-2567177 (Counterclockwise)
Preceding gene: 66045450
Following gene: 66045445
Centisome position: 42.14
GC content: 60.0
Gene sequence:
>975_bases ATGCCCAAACCGATAAAACACACACAAACCGACTATCGCCGTGCGCTGCTGGCAGGTCTGCTCGCGGGGTTGGCCCTGTG CATCACCCTTCCCGCCGAAGCACAGGAAACGCTGCGAATCGGTTACCAGAAGTCGTCGACGCTGATCACGCTGCTGAAAA CACAGGGCACTCTGGAAAAAGCCCTCGCCGCACAGCACGTTGCGGTGACCTGGCATGAGTTTCCGAGTGGCCTGCCACTG CTGGAGGCCTTGAATGTCGGCAACGTGGACATCAGCGCGGATGTGGCGGACACCGTACAGATCTTCGCTCAGGCGGCACA GGCCCGGCTGACCTACTTTGCCCAGGAAGCGGCCTCGCCTTCCGCGCAGGCAATCATCGTCCACAAAAACTCGCCCGTGC GGCAGCTATGGGATCTGAAAGGCAAAAAGGTCGCGGTCACCAAGGCGGCGGGTTCTCACTACCTGCTGATCGCGGCATTG AAAAAGGCCGGTCTGGCATTTTCCGATATTCAGCCCGCCTATCTGTCGCCCGCCGACGGCCGTGCAGCCTTCGAGAACAA CAAGGTTGACGCCTGGGTCACCTGGGAACCCTTCCTGACCAGCGCCCAACGGCAATTGCCAACGCGCACTCTGGCTGACG GCAAAGGGCTGGCCAGCTACAAGCGCTATTACCTGACCGGCACCGGCTATGCCAAGGAACACCCACAAGTGCTCAGCGTG GTTTACGAGCAGTTGCACAAGGCAGGCATCTGGCTCAAGGCCAATCCCCGCGACGCCGCAAAGGTGCTGAGTCCTTTGTG GGGCAATCTGGATATCGAAACGGTTGAAATCGCCAACAGCAACCGGGCTTATCAGATCCAGCCAGTCACGCACGATCAAC TGGACGAACAACAGCATATCGCCGACGCCTTCTTCGCTGCCGGGCTGCTGCCCAAGGCGGTGGATGCGCAGGATGTGGAG GTCTGGAAGCCTTGA
Upstream 100 bases:
>100_bases GCTGATCACCAGCGTGGCTACTGACGAAAATCATCTCCATTGCGCTGCGTGGGGATACCACTCCTGACACTCAGTGCCAC CTTCAAATACCGAGCGTGCC
Downstream 100 bases:
>100_bases GGGATGAAGGGGCACACCCGCTCGCATGGAGCGAGCATGCCCCTCGTTCAGTCTCCGGACTCAAACCCCTGGTGGCGTGG GAAACGCTCCGCGGGCGGTT
Product: ABC transporter, substrate-binding protein, aliphatic sulphonates
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MPKPIKHTQTDYRRALLAGLLAGLALCITLPAEAQETLRIGYQKSSTLITLLKTQGTLEKALAAQHVAVTWHEFPSGLPL LEALNVGNVDISADVADTVQIFAQAAQARLTYFAQEAASPSAQAIIVHKNSPVRQLWDLKGKKVAVTKAAGSHYLLIAAL KKAGLAFSDIQPAYLSPADGRAAFENNKVDAWVTWEPFLTSAQRQLPTRTLADGKGLASYKRYYLTGTGYAKEHPQVLSV VYEQLHKAGIWLKANPRDAAKVLSPLWGNLDIETVEIANSNRAYQIQPVTHDQLDEQQHIADAFFAAGLLPKAVDAQDVE VWKP
Sequences:
>Translated_324_residues MPKPIKHTQTDYRRALLAGLLAGLALCITLPAEAQETLRIGYQKSSTLITLLKTQGTLEKALAAQHVAVTWHEFPSGLPL LEALNVGNVDISADVADTVQIFAQAAQARLTYFAQEAASPSAQAIIVHKNSPVRQLWDLKGKKVAVTKAAGSHYLLIAAL KKAGLAFSDIQPAYLSPADGRAAFENNKVDAWVTWEPFLTSAQRQLPTRTLADGKGLASYKRYYLTGTGYAKEHPQVLSV VYEQLHKAGIWLKANPRDAAKVLSPLWGNLDIETVEIANSNRAYQIQPVTHDQLDEQQHIADAFFAAGLLPKAVDAQDVE VWKP >Mature_323_residues PKPIKHTQTDYRRALLAGLLAGLALCITLPAEAQETLRIGYQKSSTLITLLKTQGTLEKALAAQHVAVTWHEFPSGLPLL EALNVGNVDISADVADTVQIFAQAAQARLTYFAQEAASPSAQAIIVHKNSPVRQLWDLKGKKVAVTKAAGSHYLLIAALK KAGLAFSDIQPAYLSPADGRAAFENNKVDAWVTWEPFLTSAQRQLPTRTLADGKGLASYKRYYLTGTGYAKEHPQVLSVV YEQLHKAGIWLKANPRDAAKVLSPLWGNLDIETVEIANSNRAYQIQPVTHDQLDEQQHIADAFFAAGLLPKAVDAQDVEV WKP
Specific function: Part of a binding-protein-dependent transport system for aliphatic sulfonates. Putative binding protein [H]
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein ssuA/tauA family [H]
Homologues:
Organism=Escherichia coli, GI87081803, Length=314, Percent_Identity=37.8980891719745, Blast_Score=195, Evalue=3e-51, Organism=Escherichia coli, GI87081727, Length=223, Percent_Identity=25.5605381165919, Blast_Score=63, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010067 - InterPro: IPR015168 - InterPro: IPR001638 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 35363; Mature: 35232
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKPIKHTQTDYRRALLAGLLAGLALCITLPAEAQETLRIGYQKSSTLITLLKTQGTLEK CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEEEECCCHHHH ALAAQHVAVTWHEFPSGLPLLEALNVGNVDISADVADTVQIFAQAAQARLTYFAQEAASP HHHHHHEEEEEECCCCCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC SAQAIIVHKNSPVRQLWDLKGKKVAVTKAAGSHYLLIAALKKAGLAFSDIQPAYLSPADG CCCEEEEECCCCHHHHHCCCCCEEEEEECCCCCEEEEEEHHHHCCEECCCCCCCCCCCCC RAAFENNKVDAWVTWEPFLTSAQRQLPTRTLADGKGLASYKRYYLTGTGYAKEHPQVLSV CCCCCCCCEEEEEECCHHHHHHHHHCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHH VYEQLHKAGIWLKANPRDAAKVLSPLWGNLDIETVEIANSNRAYQIQPVTHDQLDEQQHI HHHHHHHCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHH ADAFFAAGLLPKAVDAQDVEVWKP HHHHHHHHCCCCCCCCCCCEECCC >Mature Secondary Structure PKPIKHTQTDYRRALLAGLLAGLALCITLPAEAQETLRIGYQKSSTLITLLKTQGTLEK CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEEEECCCHHHH ALAAQHVAVTWHEFPSGLPLLEALNVGNVDISADVADTVQIFAQAAQARLTYFAQEAASP HHHHHHEEEEEECCCCCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC SAQAIIVHKNSPVRQLWDLKGKKVAVTKAAGSHYLLIAALKKAGLAFSDIQPAYLSPADG CCCEEEEECCCCHHHHHCCCCCEEEEEECCCCCEEEEEEHHHHCCEECCCCCCCCCCCCC RAAFENNKVDAWVTWEPFLTSAQRQLPTRTLADGKGLASYKRYYLTGTGYAKEHPQVLSV CCCCCCCCEEEEEECCHHHHHHHHHCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHH VYEQLHKAGIWLKANPRDAAKVLSPLWGNLDIETVEIANSNRAYQIQPVTHDQLDEQQHI HHHHHHHCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHH ADAFFAAGLLPKAVDAQDVEVWKP HHHHHHHHCCCCCCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10506196; 8905232; 9278503 [H]