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The map label for this gene is yjiR [H]

Identifier: 66045240

GI number: 66045240

Start: 2321239

End: 2322678

Strand: Direct

Name: yjiR [H]

Synonym: Psyr_2000

Alternate gene names: 66045240

Gene position: 2321239-2322678 (Clockwise)

Preceding gene: 66045239

Following gene: 66045241

Centisome position: 38.09

GC content: 59.65

Gene sequence:

>1440_bases
ATGACCAATCTCTTGCTCTACCAGCGTATCGCTCAGCAGTTGGCCGAAGACATCCGTCGTGGTGTTTATCAGCCCGGCGA
GCGGGTGCCGTCCGTTCGCAAAATGAGTTCGCAGCTCAACGTCAGCCATGCAACTGTATTGCAGGCTTACGCGAACCTTG
AAGACCAGGGGCTGATCCGGGCACGTCCTCAGTCCGGCTATTACGTCCATCAAACGCCTGCGCTGACGGCATCGACCCCG
GATATCGCGCGGGTCGAGCGGCCCGGCCTGGTTACACGCAGCAGCATTATCCAGCAGGTCCTCGAAGAGTCCCGCCGCGA
AGGCGTGTTCGCCCTCGGGGCTGCGGTGCCCCATGTGGATTACCTGCCGGTACGCGCGCTGCATCAGCAACTGGCCAAGG
TCACGCGTTTTCACAGTCCGCGGGCCTTCAGTTACATGTTCAGCCCCGGCTTCGAACCCTTGCGCAGGCAGGTCGCGATT
CGTATGCGCGACGCCGGGGTGGTGGTCGATCCGTCTGAAGTGGTGATCACTCACGGCTGCGTGGATGCGCTGCAGATGGC
CCTGCGGGTGCTGACCCGGCCCGGCGATCTGATAGCCGCCGAATCGCCAGCCTATTACGGGTTGCTGCAACTTGCCGACC
TGCTGGGTTTGAAGGTCATCGAAATCCCCAGTGATCCGGCCACCGGCATCAGTCTTGAAGCCTTGCAGCTGGCGGCCAAT
CAATGGTCCATCAAGGCTCTGGTGCTGACCTCACGGCTGAGCAATCCACTGGGCGGCACCATGCCGGAGGAGCGGCAGAA
AAATCTGCTGCGGCTCACCTCGGATTTCGATATCCAGGTGGTTGAAGACGACGTCTATGGCGAGTTGATGTTCGAAGTAG
GGCGGACCAAGGCGCTCAAGGCGTTCGACCGGTTGGGGAGGGTGATTTACTGCTCGAGCTTCTCCAAGACCTTGTCGCCG
GGTGTGCGCATCGGCTGGATGATAGCCGGCAAATACCAGGCGGAAATTCAGCGCCTGCAAACCTTCAGCACTCACTCGGC
GTGCAGCGTCACGCAAATGGCTGTCGCGGCTTACCTCGAAAACGGCGGCTACGATCGGCACCTGCGCTTTATCCGTCTCG
AATACCGCAAGAATCTCAGTGCCTATCAGCTGGCGGTGCAGCAGTTCTTCCCCGAAGGCACGCAGATGAGTCGTCCCGCG
GGAGGCTTTATCCTCTGGGTCAGTCTGCCGGGCAGGGTCAACACCCAGGAGTTGCACGTGCGTGCGCTCGAGCAGGGCAT
CAGCATTGCGCCCGGATTGATTTTCAGTAACACCGAGCAGTTCAACCACTGTATTCGTTTGAATTGCGGCATGAAATGGA
ACAAGGAAGCCGAACGGGCCTTGATGACATTGGGGATTCTGGCCAAGCAGTTATGTCAGGAGGCTGTTCAGGCGTATTGA

Upstream 100 bases:

>100_bases
CCTGATTTCAAACTGTTCCCGTACACTTCCGATCTGTGCCGGTTATTACGCATCTGTATGTTCAAAAATAATAAATCACC
GGTCTTTTTGAGGCTGTGTC

Downstream 100 bases:

>100_bases
TCGGCAAAGATTTTTGTCAATTCTTCGGAACTCTTGTCTTGTCAGGTTGGCCTCAAAAGGACAGCATGTGTTTCTTTCCG
GCTTTTTGCCACTGTCTTGC

Product: regulatory protein, GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MTNLLLYQRIAQQLAEDIRRGVYQPGERVPSVRKMSSQLNVSHATVLQAYANLEDQGLIRARPQSGYYVHQTPALTASTP
DIARVERPGLVTRSSIIQQVLEESRREGVFALGAAVPHVDYLPVRALHQQLAKVTRFHSPRAFSYMFSPGFEPLRRQVAI
RMRDAGVVVDPSEVVITHGCVDALQMALRVLTRPGDLIAAESPAYYGLLQLADLLGLKVIEIPSDPATGISLEALQLAAN
QWSIKALVLTSRLSNPLGGTMPEERQKNLLRLTSDFDIQVVEDDVYGELMFEVGRTKALKAFDRLGRVIYCSSFSKTLSP
GVRIGWMIAGKYQAEIQRLQTFSTHSACSVTQMAVAAYLENGGYDRHLRFIRLEYRKNLSAYQLAVQQFFPEGTQMSRPA
GGFILWVSLPGRVNTQELHVRALEQGISIAPGLIFSNTEQFNHCIRLNCGMKWNKEAERALMTLGILAKQLCQEAVQAY

Sequences:

>Translated_479_residues
MTNLLLYQRIAQQLAEDIRRGVYQPGERVPSVRKMSSQLNVSHATVLQAYANLEDQGLIRARPQSGYYVHQTPALTASTP
DIARVERPGLVTRSSIIQQVLEESRREGVFALGAAVPHVDYLPVRALHQQLAKVTRFHSPRAFSYMFSPGFEPLRRQVAI
RMRDAGVVVDPSEVVITHGCVDALQMALRVLTRPGDLIAAESPAYYGLLQLADLLGLKVIEIPSDPATGISLEALQLAAN
QWSIKALVLTSRLSNPLGGTMPEERQKNLLRLTSDFDIQVVEDDVYGELMFEVGRTKALKAFDRLGRVIYCSSFSKTLSP
GVRIGWMIAGKYQAEIQRLQTFSTHSACSVTQMAVAAYLENGGYDRHLRFIRLEYRKNLSAYQLAVQQFFPEGTQMSRPA
GGFILWVSLPGRVNTQELHVRALEQGISIAPGLIFSNTEQFNHCIRLNCGMKWNKEAERALMTLGILAKQLCQEAVQAY
>Mature_478_residues
TNLLLYQRIAQQLAEDIRRGVYQPGERVPSVRKMSSQLNVSHATVLQAYANLEDQGLIRARPQSGYYVHQTPALTASTPD
IARVERPGLVTRSSIIQQVLEESRREGVFALGAAVPHVDYLPVRALHQQLAKVTRFHSPRAFSYMFSPGFEPLRRQVAIR
MRDAGVVVDPSEVVITHGCVDALQMALRVLTRPGDLIAAESPAYYGLLQLADLLGLKVIEIPSDPATGISLEALQLAANQ
WSIKALVLTSRLSNPLGGTMPEERQKNLLRLTSDFDIQVVEDDVYGELMFEVGRTKALKAFDRLGRVIYCSSFSKTLSPG
VRIGWMIAGKYQAEIQRLQTFSTHSACSVTQMAVAAYLENGGYDRHLRFIRLEYRKNLSAYQLAVQQFFPEGTQMSRPAG
GFILWVSLPGRVNTQELHVRALEQGISIAPGLIFSNTEQFNHCIRLNCGMKWNKEAERALMTLGILAKQLCQEAVQAY

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=359, Percent_Identity=25.3481894150418, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI33469970, Length=359, Percent_Identity=25.3481894150418, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI4507369, Length=316, Percent_Identity=23.1012658227848, Blast_Score=70, Evalue=6e-12,
Organism=Escherichia coli, GI1790797, Length=459, Percent_Identity=38.3442265795207, Blast_Score=352, Evalue=2e-98,
Organism=Escherichia coli, GI1787710, Length=468, Percent_Identity=39.1025641025641, Blast_Score=317, Evalue=1e-87,
Organism=Saccharomyces cerevisiae, GI6321000, Length=240, Percent_Identity=22.5, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356535, Length=344, Percent_Identity=22.6744186046512, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53399; Mature: 53268

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLLLYQRIAQQLAEDIRRGVYQPGERVPSVRKMSSQLNVSHATVLQAYANLEDQGLIR
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCEE
ARPQSGYYVHQTPALTASTPDIARVERPGLVTRSSIIQQVLEESRREGVFALGAAVPHVD
ECCCCCEEEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCC
YLPVRALHQQLAKVTRFHSPRAFSYMFSPGFEPLRRQVAIRMRDAGVVVDPSEVVITHGC
CCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHEEECCCEEECCCCEEEEHHH
VDALQMALRVLTRPGDLIAAESPAYYGLLQLADLLGLKVIEIPSDPATGISLEALQLAAN
HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHC
QWSIKALVLTSRLSNPLGGTMPEERQKNLLRLTSDFDIQVVEDDVYGELMFEVGRTKALK
CCCEEEEEEHHHHCCCCCCCCCHHHHHHHHEECCCCCEEEECCHHHHHHHHHHCCHHHHH
AFDRLGRVIYCSSFSKTLSPGVRIGWMIAGKYQAEIQRLQTFSTHSACSVTQMAVAAYLE
HHHHCCCEEEECCCHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
NGGYDRHLRFIRLEYRKNLSAYQLAVQQFFPEGTQMSRPAGGFILWVSLPGRVNTQELHV
CCCCCHHEEEEEEHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
RALEQGISIAPGLIFSNTEQFNHCIRLNCGMKWNKEAERALMTLGILAKQLCQEAVQAY
HHHHCCCCCCCCCEECCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNLLLYQRIAQQLAEDIRRGVYQPGERVPSVRKMSSQLNVSHATVLQAYANLEDQGLIR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCEE
ARPQSGYYVHQTPALTASTPDIARVERPGLVTRSSIIQQVLEESRREGVFALGAAVPHVD
ECCCCCEEEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCC
YLPVRALHQQLAKVTRFHSPRAFSYMFSPGFEPLRRQVAIRMRDAGVVVDPSEVVITHGC
CCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHEEECCCEEECCCCEEEEHHH
VDALQMALRVLTRPGDLIAAESPAYYGLLQLADLLGLKVIEIPSDPATGISLEALQLAAN
HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHC
QWSIKALVLTSRLSNPLGGTMPEERQKNLLRLTSDFDIQVVEDDVYGELMFEVGRTKALK
CCCEEEEEEHHHHCCCCCCCCCHHHHHHHHEECCCCCEEEECCHHHHHHHHHHCCHHHHH
AFDRLGRVIYCSSFSKTLSPGVRIGWMIAGKYQAEIQRLQTFSTHSACSVTQMAVAAYLE
HHHHCCCEEEECCCHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
NGGYDRHLRFIRLEYRKNLSAYQLAVQQFFPEGTQMSRPAGGFILWVSLPGRVNTQELHV
CCCCCHHEEEEEEHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
RALEQGISIAPGLIFSNTEQFNHCIRLNCGMKWNKEAERALMTLGILAKQLCQEAVQAY
HHHHCCCCCCCCCEECCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]