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The map label for this gene is yqhC [H]

Identifier: 66045233

GI number: 66045233

Start: 2314031

End: 2314924

Strand: Direct

Name: yqhC [H]

Synonym: Psyr_1993

Alternate gene names: 66045233

Gene position: 2314031-2314924 (Clockwise)

Preceding gene: 66045231

Following gene: 66045235

Centisome position: 37.97

GC content: 61.52

Gene sequence:

>894_bases
ATGACCTTACCTGTTATGCCGGATGGCAATGCCACCCTTGTTTCCCTGATCCAGCCGCTGGCGGTGCGCCCGGGGTTTGT
CGCTACGCCGTTGCCGGAGGTCCGCGTGCTTTCGGCGTTTGGTTATGTCGCCAGCAGCCCGCAGATCTACGAGCCGAGCC
TGATGATCGTGGTGCAGGGCAGCAAGGTCGCGTGCCTGGGGCCGCGTACGTTCGAATACGGCACCGGGCATTACCTGATT
CAGGCGCTCTCTGTGCCGTTCAAGTGCGAAACCTTTGCCACTCCGGAAAAGCCGCTTTACGGTGTTTCAGTGGCCATCGA
CCGGGTATTGCTCGGTGAGCTGGTGCAGGCGATGGGCCCGGTCACTGGACACGAGAGTCAGGTGCAGACACCGGAATCCA
TGACCTCGGTGCGCATCGACAACACCATGCGCGACAGTGTCGAGCGTCTGCTGCGGTGCCTGCATGATCCGCTGGAGTGC
CAGGCCATGGGCCAGGCACGGATTCGCGAGGTGCTGTACACCGCGCTGCGTGGACCGCAGTCCGGGGTGTTGCGTGCACT
GGTCGAACAGCAGGGGCAGTTTGCGCGAATTGCCTCGGCCGTGACCTATCTGCATGAGCATTATGACCACGCGCTGAACG
TCGACACGCTGGCCAGTTGCGCGAACATGAGCACGTCGACCTTTCATGAACATTTCAAGCGCAGCACGCTGTTGTCGCCG
GTGCAGTACCTCAAGCGCCTGCGCCTGCTCAAGGCTCAGCAATTGCTGGTGGCCGAGGGCCTGGGTGTGGCGCAGGTCGC
GCTGAAGGTCGGCTATCAAAGTGCGTCGCAGTTCAGTCGTGAATACAAACGTTACTTTGAGCGCAGACCGGGCGAAGAGG
GATGTAGGGGGTAG

Upstream 100 bases:

>100_bases
CGTGTTTCATGCCTATTCCTCCGGCCTGATATTTCAGGGTCGGCGCTGAGGCGCAAATCTGCGATGATACGGCTGTCTGT
TTCTCTGTCAGGCTGTGCCC

Downstream 100 bases:

>100_bases
CCGCAAGCTTCAAGCCGCAAGCTTCAAGATCAAAGCTTGTAGCTTGTAGCTTGTAGCTTGTAGCTTGTAGCTTGTAGCTT
GTAGCTTGTAGCTTGTAGCT

Product: helix-turn-helix, AraC type:AraC-type transcriptional regulator, N-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTLPVMPDGNATLVSLIQPLAVRPGFVATPLPEVRVLSAFGYVASSPQIYEPSLMIVVQGSKVACLGPRTFEYGTGHYLI
QALSVPFKCETFATPEKPLYGVSVAIDRVLLGELVQAMGPVTGHESQVQTPESMTSVRIDNTMRDSVERLLRCLHDPLEC
QAMGQARIREVLYTALRGPQSGVLRALVEQQGQFARIASAVTYLHEHYDHALNVDTLASCANMSTSTFHEHFKRSTLLSP
VQYLKRLRLLKAQQLLVAEGLGVAQVALKVGYQSASQFSREYKRYFERRPGEEGCRG

Sequences:

>Translated_297_residues
MTLPVMPDGNATLVSLIQPLAVRPGFVATPLPEVRVLSAFGYVASSPQIYEPSLMIVVQGSKVACLGPRTFEYGTGHYLI
QALSVPFKCETFATPEKPLYGVSVAIDRVLLGELVQAMGPVTGHESQVQTPESMTSVRIDNTMRDSVERLLRCLHDPLEC
QAMGQARIREVLYTALRGPQSGVLRALVEQQGQFARIASAVTYLHEHYDHALNVDTLASCANMSTSTFHEHFKRSTLLSP
VQYLKRLRLLKAQQLLVAEGLGVAQVALKVGYQSASQFSREYKRYFERRPGEEGCRG
>Mature_296_residues
TLPVMPDGNATLVSLIQPLAVRPGFVATPLPEVRVLSAFGYVASSPQIYEPSLMIVVQGSKVACLGPRTFEYGTGHYLIQ
ALSVPFKCETFATPEKPLYGVSVAIDRVLLGELVQAMGPVTGHESQVQTPESMTSVRIDNTMRDSVERLLRCLHDPLECQ
AMGQARIREVLYTALRGPQSGVLRALVEQQGQFARIASAVTYLHEHYDHALNVDTLASCANMSTSTFHEHFKRSTLLSPV
QYLKRLRLLKAQQLLVAEGLGVAQVALKVGYQSASQFSREYKRYFERRPGEEGCRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=284, Percent_Identity=37.6760563380282, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1790339, Length=98, Percent_Identity=31.6326530612245, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32767; Mature: 32636

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPVMPDGNATLVSLIQPLAVRPGFVATPLPEVRVLSAFGYVASSPQIYEPSLMIVVQG
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCEEEEEECC
SKVACLGPRTFEYGTGHYLIQALSVPFKCETFATPEKPLYGVSVAIDRVLLGELVQAMGP
CEEEEECCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
VTGHESQVQTPESMTSVRIDNTMRDSVERLLRCLHDPLECQAMGQARIREVLYTALRGPQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
SGVLRALVEQQGQFARIASAVTYLHEHYDHALNVDTLASCANMSTSTFHEHFKRSTLLSP
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
VQYLKRLRLLKAQQLLVAEGLGVAQVALKVGYQSASQFSREYKRYFERRPGEEGCRG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TLPVMPDGNATLVSLIQPLAVRPGFVATPLPEVRVLSAFGYVASSPQIYEPSLMIVVQG
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCEEEEEECC
SKVACLGPRTFEYGTGHYLIQALSVPFKCETFATPEKPLYGVSVAIDRVLLGELVQAMGP
CEEEEECCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
VTGHESQVQTPESMTSVRIDNTMRDSVERLLRCLHDPLECQAMGQARIREVLYTALRGPQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
SGVLRALVEQQGQFARIASAVTYLHEHYDHALNVDTLASCANMSTSTFHEHFKRSTLLSP
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
VQYLKRLRLLKAQQLLVAEGLGVAQVALKVGYQSASQFSREYKRYFERRPGEEGCRG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]