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The map label for this gene is yciR [C]

Identifier: 66045221

GI number: 66045221

Start: 2299450

End: 2301642

Strand: Reverse

Name: yciR [C]

Synonym: Psyr_1981

Alternate gene names: 66045221

Gene position: 2301642-2299450 (Counterclockwise)

Preceding gene: 66045222

Following gene: 66045216

Centisome position: 37.77

GC content: 61.01

Gene sequence:

>2193_bases
ATGCCCAACCCACCGGATAACGCCGCGCCGAAAACCACCGTACAGACGGCCTCTGCCAGGCTGTCGCTGAAAGACGCAGA
GCGGGCCCTGCAGGAAACCCGTGATCGCCTGGAGCTGGCACTGGACCTGGCGCAAATGGGCACCTGGGATCTGGATATCG
TCCGCAACCGGCTGCAGGCTTCGGCACGCGCGGCGCTGTTGCACGGCATGCCGGCACGGACCTTCGATGAGTCTGGCGGG
CAGTTCTTCGGCAGCCTGCCCGCCGAAGAACGCCGTCGCATGCGTGCAATCTACGCTGCGGCACTCGAAACCGGGCAGGA
CTGCCTGCAAGTCACCTACCGGTTTCAATTGAAGAACGGCACGTCACGCCTGCTTGAAGGCCGCGCGCGGATTTATCGGG
ATGAACAGGGCCAGCCCGTCAGGCTGTCCGGCACCCTGATGGACATTACCCAACAGTGCGCTCAGGTCGCCCTGGAGGCC
AGCGAGGAAAAATTTGCCAAGGCGTTTCATTCAAGCCCCGACTCGATCACCATCACCGAAATCGACTCGGGCCGCTACGT
CGAGGTCAACGATGGCTTCAGCCGCCTGACCGGTTTCAGCGCCCACGAAGTGCTTGGCCGTACAGCGCATGAAGTCGGCA
TCTGGACCGACACCTTGCAGCGCGAACACATGCTTGAAGAACTGCGCCAGAAAGGCCGCGTGCATCACCGCGAAATGGAC
GGTCGGGACAAGCATGGCGCGCCGCTGGTGCTGGATATATCGGTCGAGTTCATCACCCTGAACAACACCGCTTGCCTTCT
GATGAACGCCCGCGACATCGGCGCGCTTAAAAATGCCCAGGCGCAGATTCAGCACCTGGCTTATCACGATCCGCTGACCG
GGCTGCCCAATCGCGCACTGCTGCTCGACCGCCTGAGCCAGCAGGTGTCGCTGCTTCAGCACCAGAACCTGCGCGGCGCC
CTGCTGTTTCTCGATCTGGACCATTTCAAGCACATCAATGACTCGCTCGGCCATCCGGTGGGCGACAGCGTTCTGAGCAT
CATCGCCGCGCGCCTGGAAGCCAGCGTGCGCCAGGAAGACACCGTGGCGCGCTTGGGCGGCGACGAATTCGTGGTATTGA
TCTGCGGCCTGGAAGGCTCGCAGGACGAGGTCACCCGACAAGTGCGGGAGCTGGCCGACAACCTGCGCAACCTGCTGGCC
GAGCCGATGTTTCTCGACGGCCATCGCCTGCAGGTCACCCCGAGCATCGGCGTGGTGCTGATTCCGGATGATGGTCTGAC
CCCGGCCGATCTACTCAAGCGCGCCGATATTGCCCTGTATCGGGCCAAGGATTGCGGGCGCAACGCTTCACAGTTTTTCC
ATGTGTCCATGCAACAGGCCGTCAGCCAGCGTCTGCGCCTGGAAAATGACTTGCGCCTGGCCCTGACCCGCAACGAATTT
CACCTGCACTTCCAGGCCCAGGTCGACTGTCGCAACGAATACATCACCGGGGCCGAGGCCCTGCTGCGCTGGCAACACCC
CGAATACGGCTTGCTGGCGCCCGATCAGTTCGTGCAGATACTTGAAGAAAGCGGCATGATTCTGGAGGTCGGCAGCCATA
TTCTGAACGAAGCCTGCAAAACCGGTGGCCTGCTGTTAAGGCAGGGGCTGATCCCGGAGAACAGATTCCTGATGGGTGTC
AATATCAGCCCGCGACAGTTTCTCCAGCACGATTTCATCGAGCGCGTGGAACGCAGCCTGACCCTGCACCAGTTGCCGGC
GTCCATGCTCAAGCTGGAAATCACCGAAGGTATCGTCATCCAGAACCTGGACGACACCATTCTCAAGATGCTCAGCCTCA
AGGCGCTGGGCGTCAGCTTTGCGATGGATGATTTCGGCACCGGCTATTCGTCCCTGACCTATCTCAAGCGCTTGCCGGTG
GATACGCTGAAGATCGACCAGTCCTTCGTCCAGGACGCCACCAACGACCCCAACGACGCAGAAATCATCCGCGCCATCGT
CGCCATGGCGCAGAGCCTCAACCTGAACGTGATCGCGGAAGGCGTGGAAACCTCGGAGCAGTTGGCATTTCTGGAAAAAG
TCGGCTGCTACACCTATCAAGGCTATCTGTTCAGCGAACCGCTGCCAGGCCCGCAGTTCGAGTCCTTGCTGGAGCTCAAA
CGGCCTGCGCAGCAACCTGCACATCAGGACTGA

Upstream 100 bases:

>100_bases
GGCATTCATGAAACTGCTCGATGCGCAGACACAGTGAATAGAGGCTGCAGGCCGCAGACAGATCGCTCTGGCGGCTCCAT
CGATCAAAGGCTCGGATACC

Downstream 100 bases:

>100_bases
AAAAAAGGGAAGGCGCCCTGAGGCGCCTTCCCTGTTACGTGCCGCTGACTCAACATCACCTGACGGATCAGTTTTCCAGC
GCTTTCTGGCTATTGAGCGG

Product: PAS:GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 730; Mature: 729

Protein sequence:

>730_residues
MPNPPDNAAPKTTVQTASARLSLKDAERALQETRDRLELALDLAQMGTWDLDIVRNRLQASARAALLHGMPARTFDESGG
QFFGSLPAEERRRMRAIYAAALETGQDCLQVTYRFQLKNGTSRLLEGRARIYRDEQGQPVRLSGTLMDITQQCAQVALEA
SEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFSRLTGFSAHEVLGRTAHEVGIWTDTLQREHMLEELRQKGRVHHREMD
GRDKHGAPLVLDISVEFITLNNTACLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQHQNLRGA
LLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNLLA
EPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAKDCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEF
HLHFQAQVDCRNEYITGAEALLRWQHPEYGLLAPDQFVQILEESGMILEVGSHILNEACKTGGLLLRQGLIPENRFLMGV
NISPRQFLQHDFIERVERSLTLHQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMDDFGTGYSSLTYLKRLPV
DTLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEGVETSEQLAFLEKVGCYTYQGYLFSEPLPGPQFESLLELK
RPAQQPAHQD

Sequences:

>Translated_730_residues
MPNPPDNAAPKTTVQTASARLSLKDAERALQETRDRLELALDLAQMGTWDLDIVRNRLQASARAALLHGMPARTFDESGG
QFFGSLPAEERRRMRAIYAAALETGQDCLQVTYRFQLKNGTSRLLEGRARIYRDEQGQPVRLSGTLMDITQQCAQVALEA
SEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFSRLTGFSAHEVLGRTAHEVGIWTDTLQREHMLEELRQKGRVHHREMD
GRDKHGAPLVLDISVEFITLNNTACLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQHQNLRGA
LLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNLLA
EPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAKDCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEF
HLHFQAQVDCRNEYITGAEALLRWQHPEYGLLAPDQFVQILEESGMILEVGSHILNEACKTGGLLLRQGLIPENRFLMGV
NISPRQFLQHDFIERVERSLTLHQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMDDFGTGYSSLTYLKRLPV
DTLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEGVETSEQLAFLEKVGCYTYQGYLFSEPLPGPQFESLLELK
RPAQQPAHQD
>Mature_729_residues
PNPPDNAAPKTTVQTASARLSLKDAERALQETRDRLELALDLAQMGTWDLDIVRNRLQASARAALLHGMPARTFDESGGQ
FFGSLPAEERRRMRAIYAAALETGQDCLQVTYRFQLKNGTSRLLEGRARIYRDEQGQPVRLSGTLMDITQQCAQVALEAS
EEKFAKAFHSSPDSITITEIDSGRYVEVNDGFSRLTGFSAHEVLGRTAHEVGIWTDTLQREHMLEELRQKGRVHHREMDG
RDKHGAPLVLDISVEFITLNNTACLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQHQNLRGAL
LFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNLLAE
PMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAKDCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFH
LHFQAQVDCRNEYITGAEALLRWQHPEYGLLAPDQFVQILEESGMILEVGSHILNEACKTGGLLLRQGLIPENRFLMGVN
ISPRQFLQHDFIERVERSLTLHQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMDDFGTGYSSLTYLKRLPVD
TLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEGVETSEQLAFLEKVGCYTYQGYLFSEPLPGPQFESLLELKR
PAQQPAHQD

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=462, Percent_Identity=34.1991341991342, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI87081921, Length=449, Percent_Identity=32.293986636971, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI226510982, Length=440, Percent_Identity=32.0454545454545, Blast_Score=194, Evalue=2e-50,
Organism=Escherichia coli, GI1786507, Length=273, Percent_Identity=34.4322344322344, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI87081980, Length=264, Percent_Identity=33.3333333333333, Blast_Score=153, Evalue=4e-38,
Organism=Escherichia coli, GI1788502, Length=265, Percent_Identity=34.7169811320755, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI1790496, Length=258, Percent_Identity=32.5581395348837, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1787055, Length=249, Percent_Identity=32.5301204819277, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI87081845, Length=245, Percent_Identity=33.469387755102, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1788381, Length=469, Percent_Identity=26.6524520255864, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=34.8178137651822, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1788849, Length=439, Percent_Identity=26.879271070615, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87082096, Length=256, Percent_Identity=30.859375, Blast_Score=110, Evalue=5e-25,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=34.3373493975904, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI1786584, Length=214, Percent_Identity=31.3084112149533, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=34.8837209302326, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87081881, Length=216, Percent_Identity=35.1851851851852, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=35.672514619883, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=32.3699421965318, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=34.9112426035503, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=189, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=32.3863636363636, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787410, Length=151, Percent_Identity=31.1258278145695, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081974, Length=86, Percent_Identity=37.2093023255814, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788085, Length=175, Percent_Identity=32, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 81585; Mature: 81454

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNPPDNAAPKTTVQTASARLSLKDAERALQETRDRLELALDLAQMGTWDLDIVRNRLQA
CCCCCCCCCCCCHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
SARAALLHGMPARTFDESGGQFFGSLPAEERRRMRAIYAAALETGQDCLQVTYRFQLKNG
HHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCHHHHHEEEEEEECCC
TSRLLEGRARIYRDEQGQPVRLSGTLMDITQQCAQVALEASEEKFAKAFHSSPDSITITE
HHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
IDSGRYVEVNDGFSRLTGFSAHEVLGRTAHEVGIWTDTLQREHMLEELRQKGRVHHREMD
ECCCCEEEECCCHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHCCC
GRDKHGAPLVLDISVEFITLNNTACLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRAL
CCCCCCCCEEEEEEEEEEEECCCEEEEEECHHHCHHHHHHHHHHHHHHCCCCCCCCCHHH
LLDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQED
HHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
TVARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNLLAEPMFLDGHRLQVTPSIGVVL
HHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCEEE
IPDDGLTPADLLKRADIALYRAKDCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEF
ECCCCCCHHHHHHHHHHHEEECHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECEE
HLHFQAQVDCRNEYITGAEALLRWQHPEYGLLAPDQFVQILEESGMILEVGSHILNEACK
EEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHH
TGGLLLRQGLIPENRFLMGVNISPRQFLQHDFIERVERSLTLHQLPASMLKLEITEGIVI
HCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCCEEE
QNLDDTILKMLSLKALGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFVQDATNDPNDA
ECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHH
EIIRAIVAMAQSLNLNVIAEGVETSEQLAFLEKVGCYTYQGYLFSEPLPGPQFESLLELK
HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCEEEECEEECCCCCCHHHHHHHHHH
RPAQQPAHQD
HHHCCCCCCC
>Mature Secondary Structure 
PNPPDNAAPKTTVQTASARLSLKDAERALQETRDRLELALDLAQMGTWDLDIVRNRLQA
CCCCCCCCCCCHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
SARAALLHGMPARTFDESGGQFFGSLPAEERRRMRAIYAAALETGQDCLQVTYRFQLKNG
HHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCHHHHHEEEEEEECCC
TSRLLEGRARIYRDEQGQPVRLSGTLMDITQQCAQVALEASEEKFAKAFHSSPDSITITE
HHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
IDSGRYVEVNDGFSRLTGFSAHEVLGRTAHEVGIWTDTLQREHMLEELRQKGRVHHREMD
ECCCCEEEECCCHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHCCC
GRDKHGAPLVLDISVEFITLNNTACLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRAL
CCCCCCCCEEEEEEEEEEEECCCEEEEEECHHHCHHHHHHHHHHHHHHCCCCCCCCCHHH
LLDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQED
HHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
TVARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNLLAEPMFLDGHRLQVTPSIGVVL
HHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCEEE
IPDDGLTPADLLKRADIALYRAKDCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEF
ECCCCCCHHHHHHHHHHHEEECHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECEE
HLHFQAQVDCRNEYITGAEALLRWQHPEYGLLAPDQFVQILEESGMILEVGSHILNEACK
EEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHH
TGGLLLRQGLIPENRFLMGVNISPRQFLQHDFIERVERSLTLHQLPASMLKLEITEGIVI
HCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCCEEE
QNLDDTILKMLSLKALGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFVQDATNDPNDA
ECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHH
EIIRAIVAMAQSLNLNVIAEGVETSEQLAFLEKVGCYTYQGYLFSEPLPGPQFESLLELK
HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCEEEECEEECCCCCCHHHHHHHHHH
RPAQQPAHQD
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]