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The map label for this gene is dgdR [H]

Identifier: 66045169

GI number: 66045169

Start: 2200825

End: 2201748

Strand: Direct

Name: dgdR [H]

Synonym: Psyr_1928

Alternate gene names: 66045169

Gene position: 2200825-2201748 (Clockwise)

Preceding gene: 66045168

Following gene: 66045171

Centisome position: 36.12

GC content: 52.81

Gene sequence:

>924_bases
ATGTCTCGAATCTTTGATGTTGATACGCACCTTTGGCGCACGTTCAAATCGGTGAGCGAAACTCGAAGTATCACGCGGTC
TGCGGTTGCGCTGTGCAAAACTCCACCAGCCATCAGCATGCAGATAAAAAAGCTGGAAGCACTTCTGGAACTGAAGTTGT
TCGTCAGAGGCGACGACGGTTTTCGGCTGACGGTCATTGGCGAAGAAGTATTGGCGGCCGCTGAGAAGATTCTCGCCATG
CATGACAATCTGTTCCGCCTGAAGAACAAGAACCCTGATAGCGAATTGCGTCTGGGCATGCCGGATGATTACGCACTCTT
TTTCCTGCAAGGGATTGTAAAAGCCCTGGCTCGATCAAACCCCGATCTCAAGATAAAGCTGGTCTGCAAGACGTCGTCGT
TCTTGATAGACGACGTCGACCAGGGTCGACTGGACATGGCCGTTGTCGCAGTGCCGGAATCTCGGGTCATGGAGCATTCT
GAATACATCAGGCGTGAAGAACTGCACTGGATCGGCGATGCCAGGCTGGTCAGGGCAGGGCATCCGATACCGTTGGTGCA
TTTTCCCGATGGATGCATATGCCGAGAGGTCTCTGTCCAATCCTTGCAGTTTGCCGGGATGGCGTCCGAGATACGATTCA
CCTCAGAGTCCAATTTTGCCGTTTTCAATGCCATCAGTGCCGGTGTAGGTATCGGCGTGGGCGAGTTATCACTCATTCCG
GGCGATACGCCTATTATCACAAGCTCGCTGCTTCCCGCATTGCCCGCGATACGGATGTCTGTACTCTCCAACGACGATCG
CATTTCCAGAGCTGTCCTTTCCAGAATAAGCACCAGCGTTGTGAGGAGCGTCAATGCTGTCTGCGAGCAGAATATCCTCG
GAAAAAAACGCCCGGAAAATGCCTTTGCCGTTGGCGCTTTTTGA

Upstream 100 bases:

>100_bases
GGAAGGAAAGCCGGGGTGCAGTGGGAAAACCCCGGAGCGGGAAAACACCCGGTCAGCAAAGTCGACCATCCGCTTTGCAC
CGGGTAAACAGGGAAAACGG

Downstream 100 bases:

>100_bases
CACGTTCAGCTCCCGTGCCTGAAATCCGGCTGCAAATAAGCACGTCATCAGGGCTATCGCTTTCCTGATAAACTATCGGC
CTTTCCCGATTGATCGCGTC

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSRIFDVDTHLWRTFKSVSETRSITRSAVALCKTPPAISMQIKKLEALLELKLFVRGDDGFRLTVIGEEVLAAAEKILAM
HDNLFRLKNKNPDSELRLGMPDDYALFFLQGIVKALARSNPDLKIKLVCKTSSFLIDDVDQGRLDMAVVAVPESRVMEHS
EYIRREELHWIGDARLVRAGHPIPLVHFPDGCICREVSVQSLQFAGMASEIRFTSESNFAVFNAISAGVGIGVGELSLIP
GDTPIITSSLLPALPAIRMSVLSNDDRISRAVLSRISTSVVRSVNAVCEQNILGKKRPENAFAVGAF

Sequences:

>Translated_307_residues
MSRIFDVDTHLWRTFKSVSETRSITRSAVALCKTPPAISMQIKKLEALLELKLFVRGDDGFRLTVIGEEVLAAAEKILAM
HDNLFRLKNKNPDSELRLGMPDDYALFFLQGIVKALARSNPDLKIKLVCKTSSFLIDDVDQGRLDMAVVAVPESRVMEHS
EYIRREELHWIGDARLVRAGHPIPLVHFPDGCICREVSVQSLQFAGMASEIRFTSESNFAVFNAISAGVGIGVGELSLIP
GDTPIITSSLLPALPAIRMSVLSNDDRISRAVLSRISTSVVRSVNAVCEQNILGKKRPENAFAVGAF
>Mature_306_residues
SRIFDVDTHLWRTFKSVSETRSITRSAVALCKTPPAISMQIKKLEALLELKLFVRGDDGFRLTVIGEEVLAAAEKILAMH
DNLFRLKNKNPDSELRLGMPDDYALFFLQGIVKALARSNPDLKIKLVCKTSSFLIDDVDQGRLDMAVVAVPESRVMEHSE
YIRREELHWIGDARLVRAGHPIPLVHFPDGCICREVSVQSLQFAGMASEIRFTSESNFAVFNAISAGVGIGVGELSLIPG
DTPIITSSLLPALPAIRMSVLSNDDRISRAVLSRISTSVVRSVNAVCEQNILGKKRPENAFAVGAF

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=255, Percent_Identity=26.2745098039216, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33818; Mature: 33686

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRIFDVDTHLWRTFKSVSETRSITRSAVALCKTPPAISMQIKKLEALLELKLFVRGDDG
CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEEECCCC
FRLTVIGEEVLAAAEKILAMHDNLFRLKNKNPDSELRLGMPDDYALFFLQGIVKALARSN
EEEEEECHHHHHHHHHHHHHHCCHHEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCC
PDLKIKLVCKTSSFLIDDVDQGRLDMAVVAVPESRVMEHSEYIRREELHWIGDARLVRAG
CCEEEEEEEECCCEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEECC
HPIPLVHFPDGCICREVSVQSLQFAGMASEIRFTSESNFAVFNAISAGVGIGVGELSLIP
CCEEEEECCCCCEEHHHHHHHHHHCCCHHHEEECCCCCEEEEEHHHHCCCCCCCCEEECC
GDTPIITSSLLPALPAIRMSVLSNDDRISRAVLSRISTSVVRSVNAVCEQNILGKKRPEN
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AFAVGAF
CEEECCC
>Mature Secondary Structure 
SRIFDVDTHLWRTFKSVSETRSITRSAVALCKTPPAISMQIKKLEALLELKLFVRGDDG
CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEEECCCC
FRLTVIGEEVLAAAEKILAMHDNLFRLKNKNPDSELRLGMPDDYALFFLQGIVKALARSN
EEEEEECHHHHHHHHHHHHHHCCHHEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCC
PDLKIKLVCKTSSFLIDDVDQGRLDMAVVAVPESRVMEHSEYIRREELHWIGDARLVRAG
CCEEEEEEEECCCEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEECC
HPIPLVHFPDGCICREVSVQSLQFAGMASEIRFTSESNFAVFNAISAGVGIGVGELSLIP
CCEEEEECCCCCEEHHHHHHHHHHCCCHHHEEECCCCCEEEEEHHHHCCCCCCCCEEECC
GDTPIITSSLLPALPAIRMSVLSNDDRISRAVLSRISTSVVRSVNAVCEQNILGKKRPEN
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AFAVGAF
CEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]