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The map label for this gene is pupB [H]

Identifier: 66045028

GI number: 66045028

Start: 2033248

End: 2035401

Strand: Reverse

Name: pupB [H]

Synonym: Psyr_1784

Alternate gene names: 66045028

Gene position: 2035401-2033248 (Counterclockwise)

Preceding gene: 66045033

Following gene: 66045027

Centisome position: 33.4

GC content: 61.33

Gene sequence:

>2154_bases
ATGTCGGGGCAACAATCGCAAAGCCGTAATCGTTTCACACCGGGTCTGCTGGCCATGGGCATCTGGGCTGCCACTACACA
GGCAGCCCTTGGCGCTGAAGAACAGCCCGCCACGACCATGGAGCTGGGCGCCACGCAGATCAGCAGTGATCAACTTGGCT
CCACAACCGAGGGCAGTCAGTCCTACACCACCGGCCCGATGCAGACCGCGACCAAGTTGCCGCTGACCATTCGTGAAACG
CCGCAGGCCGTGACGGTCGTCACCCGCCAACGCATGGACGATCAGGCCATGACCAGCATCAATGACGTGGTCAGGTATAC
GCCGGGACTGTTTTTGGACCAGTCCAGCGGACCGGGCCGGCAAACCTACACGTCGCGCGGTTTCGACATCGACAACATCA
TGTACGACGGCCTGCCCGCCTCCTACTCGGGCTACACGGCAGGCGTTCAACCCAATCTGGCCATGTTCGATCATGTCGAG
GTGATCAGGGGCGCGACTGGCCTGGCGACAGGGTCTGGCAATCCTTCGGCAGCGATCAATATGGTGCGCAAACGCCCTAC
CGCCGTGCCACAGGTCACCCTCACCGGCACGGTCGGGAGCTGGGACGATTACCGTGGCGTCTTCGATGCGTCCGGCCCAC
TGAACGACAGCCGCACGGTTCGCGGCCGCATAGTCGGCTCCTACCAGGATGCCAACAGCTTCCGCGACAAGGAAAAGAGC
GATCACGGCGTGTTCTACGGGGTGGTCGAAGCCGATCTGAGCGACGCGACGACCGCCACCCTGGGCCTGTCTCGTCAGGA
AGACCAGACCAACTACTTCTGGGGCGGCCTGCCCTTGGGCGTCGATGGTCACCACCTGAACCTGCCGCGCTCCACCTATT
CCGGCTCGGATTGGGAAAACAAGAAAATCCAGATAGACACCATGTTCGGTGAGCTGGAGCACCGTTTCGACAACGACTGG
AAATTGCGCGTAGCAGGCTCGAGCTCGTCGCTGGACGGCCTGTTTTCGGGGACCTACCTGTCTCGCTACAACGGCCCGCT
GGAAACCACGGCCTACCAGTCGAGGCCGGAAGAGCAGCAGAGCGCCTTCGATGTCTACGCCAGTGGGCCGGTCGAAGCCT
TCGGCCGCACTCATGAAGTGGTGGTCGGCACCAGCCGGCGCGTGTACGACCAGACCAGCAAGGAGTACAGCCCCTACGAC
ACCGGTCTGCCCATTGCCGCGCCAAAGCCGGACTTCGTTCGCAATGGCAAGACGCACAGCATCGCCACCCAGGACGCGGT
CTATCTCACCACACGCCTGAGCCTGGCCGATCCGCTGACCCTGATCCTCGGCGGCCGTCTGGACTGGTACGACTACGATG
ACCGCGTCGGCGATGAAGACTACAAAGTCACCCGTAACCTGACGCGCTACGCAGGGCTGATCTATAAGCTGGATGAACAC
CACTCGCTGTACACCAGCTACACCGACGTCTTTCAGCCGCAGAGCGCACAGGACCTGTCCGGCAAGGTGCTCAAGCCGGT
GGTCGGCGAAAACTATGAAGTCGGTATCAAGGGTGAATACTTCAACGGCGCCCTCAACACCTCCCTGGCGGTGTTCCAGA
TCGACCAGAAAAACCTCAAGACCCAGTCACCGACCCAGGCAGGCTGCGCGGTCCTGACCTGTTACGACGCTGCAGGCCTG
GTACGCAGTCAGGGCATCGAGATGGAGCTGCAAGGCGCGTTGACCGAGAACTGGCAAGTCGGCGCCGGCTACACCTACGC
CCGCACCCACTACATCAAGGATGCCGATCCGGCGAACAAGAACCAGCAATTCAACACCGACACGCCCGAGCATCTGTTCA
AGGTATCGACGGTCTATCGCCTGCAGGGTGCACTGGAGAAAATACGCGTCGGTGGCAACGTCTACTGGCAAAGCCGCATG
TACAACGACATCGCACTCACCGATGGCAGCTATCGCCTGGAACAGGGCAGCTACGCCGTCGCCGACCTGATGGCGGGGTA
TCAGGTGAGCAAGAACCTCGACCTGCAACTGAACGCCAACAACATATTCGACCGCACCTACTACACGGCGATTGGCGCCA
GCTCGGTCTGGGGCTCCACCGACGTCTACGGCAACCCGCGCAGTTATGCGTTGACGGCCAAGTACAGCTTCTGA

Upstream 100 bases:

>100_bases
CAGTGTCTTTTTCTGTGCGAAACAACCTGTCACACTAATGCGAACCATTATCAACATTATTATCATCCTGCCATGGAGGG
CATCAGGGAGTGTCGGGTTC

Downstream 100 bases:

>100_bases
ACCTGAGCCACGCTGCTACCGGGCATGCTCGGTAGCAGCGTGGTTATCTGAGCGTTTACGCACCGCCTTCCAGACCAAAC
GCCTTCGCCATCCCGCCTGC

Product: TonB-dependent siderophore receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 717; Mature: 716

Protein sequence:

>717_residues
MSGQQSQSRNRFTPGLLAMGIWAATTQAALGAEEQPATTMELGATQISSDQLGSTTEGSQSYTTGPMQTATKLPLTIRET
PQAVTVVTRQRMDDQAMTSINDVVRYTPGLFLDQSSGPGRQTYTSRGFDIDNIMYDGLPASYSGYTAGVQPNLAMFDHVE
VIRGATGLATGSGNPSAAINMVRKRPTAVPQVTLTGTVGSWDDYRGVFDASGPLNDSRTVRGRIVGSYQDANSFRDKEKS
DHGVFYGVVEADLSDATTATLGLSRQEDQTNYFWGGLPLGVDGHHLNLPRSTYSGSDWENKKIQIDTMFGELEHRFDNDW
KLRVAGSSSSLDGLFSGTYLSRYNGPLETTAYQSRPEEQQSAFDVYASGPVEAFGRTHEVVVGTSRRVYDQTSKEYSPYD
TGLPIAAPKPDFVRNGKTHSIATQDAVYLTTRLSLADPLTLILGGRLDWYDYDDRVGDEDYKVTRNLTRYAGLIYKLDEH
HSLYTSYTDVFQPQSAQDLSGKVLKPVVGENYEVGIKGEYFNGALNTSLAVFQIDQKNLKTQSPTQAGCAVLTCYDAAGL
VRSQGIEMELQGALTENWQVGAGYTYARTHYIKDADPANKNQQFNTDTPEHLFKVSTVYRLQGALEKIRVGGNVYWQSRM
YNDIALTDGSYRLEQGSYAVADLMAGYQVSKNLDLQLNANNIFDRTYYTAIGASSVWGSTDVYGNPRSYALTAKYSF

Sequences:

>Translated_717_residues
MSGQQSQSRNRFTPGLLAMGIWAATTQAALGAEEQPATTMELGATQISSDQLGSTTEGSQSYTTGPMQTATKLPLTIRET
PQAVTVVTRQRMDDQAMTSINDVVRYTPGLFLDQSSGPGRQTYTSRGFDIDNIMYDGLPASYSGYTAGVQPNLAMFDHVE
VIRGATGLATGSGNPSAAINMVRKRPTAVPQVTLTGTVGSWDDYRGVFDASGPLNDSRTVRGRIVGSYQDANSFRDKEKS
DHGVFYGVVEADLSDATTATLGLSRQEDQTNYFWGGLPLGVDGHHLNLPRSTYSGSDWENKKIQIDTMFGELEHRFDNDW
KLRVAGSSSSLDGLFSGTYLSRYNGPLETTAYQSRPEEQQSAFDVYASGPVEAFGRTHEVVVGTSRRVYDQTSKEYSPYD
TGLPIAAPKPDFVRNGKTHSIATQDAVYLTTRLSLADPLTLILGGRLDWYDYDDRVGDEDYKVTRNLTRYAGLIYKLDEH
HSLYTSYTDVFQPQSAQDLSGKVLKPVVGENYEVGIKGEYFNGALNTSLAVFQIDQKNLKTQSPTQAGCAVLTCYDAAGL
VRSQGIEMELQGALTENWQVGAGYTYARTHYIKDADPANKNQQFNTDTPEHLFKVSTVYRLQGALEKIRVGGNVYWQSRM
YNDIALTDGSYRLEQGSYAVADLMAGYQVSKNLDLQLNANNIFDRTYYTAIGASSVWGSTDVYGNPRSYALTAKYSF
>Mature_716_residues
SGQQSQSRNRFTPGLLAMGIWAATTQAALGAEEQPATTMELGATQISSDQLGSTTEGSQSYTTGPMQTATKLPLTIRETP
QAVTVVTRQRMDDQAMTSINDVVRYTPGLFLDQSSGPGRQTYTSRGFDIDNIMYDGLPASYSGYTAGVQPNLAMFDHVEV
IRGATGLATGSGNPSAAINMVRKRPTAVPQVTLTGTVGSWDDYRGVFDASGPLNDSRTVRGRIVGSYQDANSFRDKEKSD
HGVFYGVVEADLSDATTATLGLSRQEDQTNYFWGGLPLGVDGHHLNLPRSTYSGSDWENKKIQIDTMFGELEHRFDNDWK
LRVAGSSSSLDGLFSGTYLSRYNGPLETTAYQSRPEEQQSAFDVYASGPVEAFGRTHEVVVGTSRRVYDQTSKEYSPYDT
GLPIAAPKPDFVRNGKTHSIATQDAVYLTTRLSLADPLTLILGGRLDWYDYDDRVGDEDYKVTRNLTRYAGLIYKLDEHH
SLYTSYTDVFQPQSAQDLSGKVLKPVVGENYEVGIKGEYFNGALNTSLAVFQIDQKNLKTQSPTQAGCAVLTCYDAAGLV
RSQGIEMELQGALTENWQVGAGYTYARTHYIKDADPANKNQQFNTDTPEHLFKVSTVYRLQGALEKIRVGGNVYWQSRMY
NDIALTDGSYRLEQGSYAVADLMAGYQVSKNLDLQLNANNIFDRTYYTAIGASSVWGSTDVYGNPRSYALTAKYSF

Specific function: Specific receptor for the siderophores ferric pseudobactin BN8 and ferric pseudobactin BN7, iron chelating molecules that allow the organism to extract iron from the environment, especially under iron-restricted conditions [H]

COG id: COG4773

COG function: function code P; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787344, Length=756, Percent_Identity=35.5820105820106, Blast_Score=402, Evalue=1e-113,
Organism=Escherichia coli, GI1786344, Length=763, Percent_Identity=24.7706422018349, Blast_Score=117, Evalue=4e-27,
Organism=Escherichia coli, GI1787024, Length=258, Percent_Identity=30.6201550387597, Blast_Score=90, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR011662
- InterPro:   IPR000531
- InterPro:   IPR010917
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 78818; Mature: 78687

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGQQSQSRNRFTPGLLAMGIWAATTQAALGAEEQPATTMELGATQISSDQLGSTTEGSQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEECCCCCCCCCCCCCC
SYTTGPMQTATKLPLTIRETPQAVTVVTRQRMDDQAMTSINDVVRYTPGLFLDQSSGPGR
CCCCCCCCHHHCCCEEEECCCCEEEHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCC
QTYTSRGFDIDNIMYDGLPASYSGYTAGVQPNLAMFDHVEVIRGATGLATGSGNPSAAIN
CCCCCCCCCHHHHEECCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEECCCCCCHHHHH
MVRKRPTAVPQVTLTGTVGSWDDYRGVFDASGPLNDSRTVRGRIVGSYQDANSFRDKEKS
HHHHCCCCCCEEEEEECCCCCHHCCCEECCCCCCCCCCEEEEEEEECCCCCHHHHCCCCC
DHGVFYGVVEADLSDATTATLGLSRQEDQTNYFWGGLPLGVDGHHLNLPRSTYSGSDWEN
CCCEEEEEEECCCCCCCEEEECCCCCCCCCCEEECCEEECCCCCEECCCCCCCCCCCCCC
KKIQIDTMFGELEHRFDNDWKLRVAGSSSSLDGLFSGTYLSRYNGPLETTAYQSRPEEQQ
CEEEEEEEHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCHHCCCCHHHH
SAFDVYASGPVEAFGRTHEVVVGTSRRVYDQTSKEYSPYDTGLPIAAPKPDFVRNGKTHS
HHEEEEECCCHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCE
IATQDAVYLTTRLSLADPLTLILGGRLDWYDYDDRVGDEDYKVTRNLTRYAGLIYKLDEH
EECCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCEEEEECCC
HSLYTSYTDVFQPQSAQDLSGKVLKPVVGENYEVGIKGEYFNGALNTSLAVFQIDQKNLK
CCHHHHHHHHCCCCCCCCCCCCEEHHHCCCCEEEEEECEECCCCCCCEEEEEEECHHCCC
TQSPTQAGCAVLTCYDAAGLVRSQGIEMELQGALTENWQVGAGYTYARTHYIKDADPANK
CCCCCCCCEEEEEEECHHHHHHHCCCCEEEECCCCCCEEECCCEEEEEEEEECCCCCCCC
NQQFNTDTPEHLFKVSTVYRLQGALEKIRVGGNVYWQSRMYNDIALTDGSYRLEQGSYAV
CCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCEEEEECCCEEECCCCCHH
ADLMAGYQVSKNLDLQLNANNIFDRTYYTAIGASSVWGSTDVYGNPRSYALTAKYSF
HHHHHCCEECCCCEEEECCCCEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
SGQQSQSRNRFTPGLLAMGIWAATTQAALGAEEQPATTMELGATQISSDQLGSTTEGSQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEECCCCCCCCCCCCCC
SYTTGPMQTATKLPLTIRETPQAVTVVTRQRMDDQAMTSINDVVRYTPGLFLDQSSGPGR
CCCCCCCCHHHCCCEEEECCCCEEEHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCC
QTYTSRGFDIDNIMYDGLPASYSGYTAGVQPNLAMFDHVEVIRGATGLATGSGNPSAAIN
CCCCCCCCCHHHHEECCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEECCCCCCHHHHH
MVRKRPTAVPQVTLTGTVGSWDDYRGVFDASGPLNDSRTVRGRIVGSYQDANSFRDKEKS
HHHHCCCCCCEEEEEECCCCCHHCCCEECCCCCCCCCCEEEEEEEECCCCCHHHHCCCCC
DHGVFYGVVEADLSDATTATLGLSRQEDQTNYFWGGLPLGVDGHHLNLPRSTYSGSDWEN
CCCEEEEEEECCCCCCCEEEECCCCCCCCCCEEECCEEECCCCCEECCCCCCCCCCCCCC
KKIQIDTMFGELEHRFDNDWKLRVAGSSSSLDGLFSGTYLSRYNGPLETTAYQSRPEEQQ
CEEEEEEEHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCHHCCCCHHHH
SAFDVYASGPVEAFGRTHEVVVGTSRRVYDQTSKEYSPYDTGLPIAAPKPDFVRNGKTHS
HHEEEEECCCHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCE
IATQDAVYLTTRLSLADPLTLILGGRLDWYDYDDRVGDEDYKVTRNLTRYAGLIYKLDEH
EECCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCEEEEECCC
HSLYTSYTDVFQPQSAQDLSGKVLKPVVGENYEVGIKGEYFNGALNTSLAVFQIDQKNLK
CCHHHHHHHHCCCCCCCCCCCCEEHHHCCCCEEEEEECEECCCCCCCEEEEEEECHHCCC
TQSPTQAGCAVLTCYDAAGLVRSQGIEMELQGALTENWQVGAGYTYARTHYIKDADPANK
CCCCCCCCEEEEEEECHHHHHHHCCCCEEEECCCCCCEEECCCEEEEEEEEECCCCCCCC
NQQFNTDTPEHLFKVSTVYRLQGALEKIRVGGNVYWQSRMYNDIALTDGSYRLEQGSYAV
CCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCEEEEECCCEEECCCCCHH
ADLMAGYQVSKNLDLQLNANNIFDRTYYTAIGASSVWGSTDVYGNPRSYALTAKYSF
HHHHHCCEECCCCEEEECCCCEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8392140 [H]