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The map label for this gene is ycdC [C]

Identifier: 66045025

GI number: 66045025

Start: 2028872

End: 2029510

Strand: Direct

Name: ycdC [C]

Synonym: Psyr_1780

Alternate gene names: 66045025

Gene position: 2028872-2029510 (Clockwise)

Preceding gene: 66045024

Following gene: 66045029

Centisome position: 33.29

GC content: 58.22

Gene sequence:

>639_bases
ATGTCCATCGATGTAAACAGTCCCGCTACTCCTGCACCCACCAAGCGTCGCCTGCCCAAGGGCGAGGTGCGCAAGGCCGA
GATCATCAAGGCGGCCATGACCCTTTTCGCTCGGGATGGTTATGCCGGCGCCTCGCTGACCAACATTGCCAAGGTAGCGG
GTCTCTCTCAGGTCGGCCTGCTGCACCATTTCCCGACCAAACTGGTGCTGCTGCAAGCTGTTCTCGAACATCGCGACCAG
TACATTGCCGGCCGGCTGCAGGATGCCGATCAGGTCGCTTCTCTACAGGGGTTCCTGTCGTTTCTGAAACAGGTCATGAG
TTTCAGTATCGAAGACGCCGCGGTCAGCCAGGCGCTGATGATCATCAACACTGAAAGTCTGTCGGTCACACATCCTGCAC
ACCGCTGGTTCAGCGAGCGTTTTGCGATTGTGCACGGACATCTTCAGGCGCATCTGAAGTTGCTGGTCGAGGCAGGCGAA
ATTCGGGCGGATATTGACGCAAGGCAGATCAGCCTGGAGATAGCCGCCATGATGGATGGCATGCAGATTCAGTGGCTTCG
ATCGCCAAGGGATGTGCAGATAGAGGAGGGGTTCGCCAGGTTTCTCGAACGACTGGCGCGGGATCTGGCGGCACGCTGA

Upstream 100 bases:

>100_bases
TTACCTGATGCGGGTGGGGCTTTCGAGTCAGCCTTTTTTCGGGGTTTTTCGGAACGCGTGCTAGGATTTACCCTTTCGTT
ATGCGAAACGTGCCCTTCGT

Downstream 100 bases:

>100_bases
GCTGCGAGCATTTACCAGACAGGCATCGGTGGTCCTGTCGACCACCGATGCCTTTGGTTTGGGGATGTTGCTTAGTAAGC
TTGTTCTGCCTTGACCTGTA

Product: regulatory protein, TetR

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator TetR Family Protein; Regulator; Transcriptional Regulator Protein; Regulatory Protein TetR; Transcriptional Regulator TetR

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MSIDVNSPATPAPTKRRLPKGEVRKAEIIKAAMTLFARDGYAGASLTNIAKVAGLSQVGLLHHFPTKLVLLQAVLEHRDQ
YIAGRLQDADQVASLQGFLSFLKQVMSFSIEDAAVSQALMIINTESLSVTHPAHRWFSERFAIVHGHLQAHLKLLVEAGE
IRADIDARQISLEIAAMMDGMQIQWLRSPRDVQIEEGFARFLERLARDLAAR

Sequences:

>Translated_212_residues
MSIDVNSPATPAPTKRRLPKGEVRKAEIIKAAMTLFARDGYAGASLTNIAKVAGLSQVGLLHHFPTKLVLLQAVLEHRDQ
YIAGRLQDADQVASLQGFLSFLKQVMSFSIEDAAVSQALMIINTESLSVTHPAHRWFSERFAIVHGHLQAHLKLLVEAGE
IRADIDARQISLEIAAMMDGMQIQWLRSPRDVQIEEGFARFLERLARDLAAR
>Mature_211_residues
SIDVNSPATPAPTKRRLPKGEVRKAEIIKAAMTLFARDGYAGASLTNIAKVAGLSQVGLLHHFPTKLVLLQAVLEHRDQY
IAGRLQDADQVASLQGFLSFLKQVMSFSIEDAAVSQALMIINTESLSVTHPAHRWFSERFAIVHGHLQAHLKLLVEAGEI
RADIDARQISLEIAAMMDGMQIQWLRSPRDVQIEEGFARFLERLARDLAAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23516; Mature: 23384

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDVNSPATPAPTKRRLPKGEVRKAEIIKAAMTLFARDGYAGASLTNIAKVAGLSQVGL
CCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHH
LHHFPTKLVLLQAVLEHRDQYIAGRLQDADQVASLQGFLSFLKQVMSFSIEDAAVSQALM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHE
IINTESLSVTHPAHRWFSERFAIVHGHLQAHLKLLVEAGEIRADIDARQISLEIAAMMDG
EEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
MQIQWLRSPRDVQIEEGFARFLERLARDLAAR
CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIDVNSPATPAPTKRRLPKGEVRKAEIIKAAMTLFARDGYAGASLTNIAKVAGLSQVGL
CCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHH
LHHFPTKLVLLQAVLEHRDQYIAGRLQDADQVASLQGFLSFLKQVMSFSIEDAAVSQALM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHE
IINTESLSVTHPAHRWFSERFAIVHGHLQAHLKLLVEAGEIRADIDARQISLEIAAMMDG
EEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
MQIQWLRSPRDVQIEEGFARFLERLARDLAAR
CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA