Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698

Click here to switch to the map view.

The map label for this gene is yejA [C]

Identifier: 66045004

GI number: 66045004

Start: 1999357

End: 2001186

Strand: Reverse

Name: yejA [C]

Synonym: Psyr_1759

Alternate gene names: 66045004

Gene position: 2001186-1999357 (Counterclockwise)

Preceding gene: 66045005

Following gene: 66045003

Centisome position: 32.84

GC content: 61.04

Gene sequence:

>1830_bases
GTGATACGTCCCTTCCTGCTAACCCTCAGCCTGGCCTTGAGCTTCTGCGCCAACGCAGCCATTACTGAAAGTCATGGTTA
CGCGCAGTTTGGTGTTCTCAAGTACCCGGCCAGCTTCACTCATTTCGACTGGGTCAATCCCGAGGCGCCGAAAGGTGGCA
CCCTGAGAATGATGGCCTTCGGCACGTTCGACACGCTCAACCCCTACACATTCAAGGGCAGCAGCCCGGTCTCGACCGGC
AACTTCCTGCAATATGGCGTCAACGAGCTGAATGAACCGCTGATGGTCGGCACGGGCCAGTACGACCCGTCCGGCGATGA
ACCGACCTCCAGTTACGGGCTGATCGCCCAGTCCGTGGAATACAGCGAGGACCGCAGCTGGGTGGTGTTCAACCTGCGCC
CACAGGCGCGCTTCCATGACGGCAAGCCCATCACCGCCTACGACGTGGCGTTTTCCTACCGGACACTGCTCAAGGACGGT
CACCCTCAATACCGCACCGCCCTGCAGGAAGTGCAGCGCGTCGACATCCTCAATCGTCATCGCATCCGCTTTGTCTTCAA
GCGCTCCGGCAACCCGCTGCTGATCCTGCGCCTGGGCGAACTGCCAGTGTTGCCGCAGCATTACTGGAAAGACAGGGATT
TCAAGGCGACCACCTTCGAGCCGCCGCTGGGCAGTGGTCCCTACCGCATCACCCGCGTGCAGCCGGGTCGGCAACTGGTG
TTCGAGCGGGTCAAGGATTACTGGGGCAAGGACTTGCCGGTCAACCGCGGCAAATACAATTTCGACCGCGTCGAGGTCGA
GTTCTACCGCGACAGCGACGTGGCGTTCGAAGCGTTCAAGGCGGGTGAATTCGACATCTACATCGAGCATCAGGCCAAGA
ACTGGGCCAATGGCTATGACTTCCCTGCAGTCGCCAACGGTCAGGTGATCAAGGCGCAGATTCCGCACCGCATACCGACC
CAGACCCAGGGCCTGTTCATGAACACGCGGCGCGCCGCCTTCGCCGACATCCGCGTGCGCGAAGCCCTGGGGCTGCTGTT
CAATTTCGAATGGACCAACCGCACGCTGTTCAGCGACGCCTATGACCGCTCGACCAGTTACTACCCCAACAGCGAATTTT
CCGCGACGGGCCTGCCGACCGGGGCTGAATGGCTGCTCCTGGCGCCCTACCGTGATCAGTTGCCTGCCAGCCTGTTCACC
CAGCCGTTCGCCCCGTCGAAAACCGATGGCGGCGGGATCCCGCGCGAGACCTTGCGCAAGGCCCTGAAGCTGCTTGCCGA
GGCAGGCTGGACGCTCTCGGACAAGGGTTTGCTCAATGCCGACAAGCAACCTTTGCGCTTCGAGATCCTGCTGGTCAATC
CCAACCTGGAACGCATTCTGCAACCCTACATCGAAGACCTGCGCCGCCTGGGAATCAATGCAGGACTGCGTACCGTCGAC
CGCGCCCAATACAAGCAACGCCTGGACCGTTTCGATTTCGACATGATTCTGATGACCCTGCAACAGACCCTGAGCCCCGG
TCTGGAGCAGTGGCAATACTTCCATTCCAGTCAGGCCGCGATCAACGGCAGCAAGAACTACGCGGGTATCGCCAACCCCG
TGGTCGATGCCCTGCTGAACAAACTGCTGGCCGCGCAGACCCGCGACGATCAGGTCGCCGCGGCGCGGGCGCTGGACCGC
GTACTGCTGTCTCAGCACTACAGCATTCCCAACTGGTATCTGAACAATCATCGGCTTGCCTATCGCAACCGATTCGCCAT
GGTCACTACCCCGCCCTATACCCTGGGGCTGCGTGCGTGGTGGCTCAAGACTCTGGAGAAGCCCCGATGA

Upstream 100 bases:

>100_bases
GGTGGCCGATGCAGCCCCGGCAACGCCATCACCTGCAGTCTTTTTCCAGCTGGAACAAGCTGTTACTGTTAGCGACCCGA
AAGCCCAAGCCGCCTGGATC

Downstream 100 bases:

>100_bases
ACCCTCTGCACTCCCTGCGCTCGCAGGCAGCCGGCCTGCTGCTGGCCAGCCTCGCCTGCACGGTACAGGCTGCGCCTCAG
CATGGCGTGACGCTGTACGA

Product: extracellular solute-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 609; Mature: 609

Protein sequence:

>609_residues
MIRPFLLTLSLALSFCANAAITESHGYAQFGVLKYPASFTHFDWVNPEAPKGGTLRMMAFGTFDTLNPYTFKGSSPVSTG
NFLQYGVNELNEPLMVGTGQYDPSGDEPTSSYGLIAQSVEYSEDRSWVVFNLRPQARFHDGKPITAYDVAFSYRTLLKDG
HPQYRTALQEVQRVDILNRHRIRFVFKRSGNPLLILRLGELPVLPQHYWKDRDFKATTFEPPLGSGPYRITRVQPGRQLV
FERVKDYWGKDLPVNRGKYNFDRVEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYDFPAVANGQVIKAQIPHRIPT
QTQGLFMNTRRAAFADIRVREALGLLFNFEWTNRTLFSDAYDRSTSYYPNSEFSATGLPTGAEWLLLAPYRDQLPASLFT
QPFAPSKTDGGGIPRETLRKALKLLAEAGWTLSDKGLLNADKQPLRFEILLVNPNLERILQPYIEDLRRLGINAGLRTVD
RAQYKQRLDRFDFDMILMTLQQTLSPGLEQWQYFHSSQAAINGSKNYAGIANPVVDALLNKLLAAQTRDDQVAAARALDR
VLLSQHYSIPNWYLNNHRLAYRNRFAMVTTPPYTLGLRAWWLKTLEKPR

Sequences:

>Translated_609_residues
MIRPFLLTLSLALSFCANAAITESHGYAQFGVLKYPASFTHFDWVNPEAPKGGTLRMMAFGTFDTLNPYTFKGSSPVSTG
NFLQYGVNELNEPLMVGTGQYDPSGDEPTSSYGLIAQSVEYSEDRSWVVFNLRPQARFHDGKPITAYDVAFSYRTLLKDG
HPQYRTALQEVQRVDILNRHRIRFVFKRSGNPLLILRLGELPVLPQHYWKDRDFKATTFEPPLGSGPYRITRVQPGRQLV
FERVKDYWGKDLPVNRGKYNFDRVEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYDFPAVANGQVIKAQIPHRIPT
QTQGLFMNTRRAAFADIRVREALGLLFNFEWTNRTLFSDAYDRSTSYYPNSEFSATGLPTGAEWLLLAPYRDQLPASLFT
QPFAPSKTDGGGIPRETLRKALKLLAEAGWTLSDKGLLNADKQPLRFEILLVNPNLERILQPYIEDLRRLGINAGLRTVD
RAQYKQRLDRFDFDMILMTLQQTLSPGLEQWQYFHSSQAAINGSKNYAGIANPVVDALLNKLLAAQTRDDQVAAARALDR
VLLSQHYSIPNWYLNNHRLAYRNRFAMVTTPPYTLGLRAWWLKTLEKPR
>Mature_609_residues
MIRPFLLTLSLALSFCANAAITESHGYAQFGVLKYPASFTHFDWVNPEAPKGGTLRMMAFGTFDTLNPYTFKGSSPVSTG
NFLQYGVNELNEPLMVGTGQYDPSGDEPTSSYGLIAQSVEYSEDRSWVVFNLRPQARFHDGKPITAYDVAFSYRTLLKDG
HPQYRTALQEVQRVDILNRHRIRFVFKRSGNPLLILRLGELPVLPQHYWKDRDFKATTFEPPLGSGPYRITRVQPGRQLV
FERVKDYWGKDLPVNRGKYNFDRVEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYDFPAVANGQVIKAQIPHRIPT
QTQGLFMNTRRAAFADIRVREALGLLFNFEWTNRTLFSDAYDRSTSYYPNSEFSATGLPTGAEWLLLAPYRDQLPASLFT
QPFAPSKTDGGGIPRETLRKALKLLAEAGWTLSDKGLLNADKQPLRFEILLVNPNLERILQPYIEDLRRLGINAGLRTVD
RAQYKQRLDRFDFDMILMTLQQTLSPGLEQWQYFHSSQAAINGSKNYAGIANPVVDALLNKLLAAQTRDDQVAAARALDR
VLLSQHYSIPNWYLNNHRLAYRNRFAMVTTPPYTLGLRAWWLKTLEKPR

Specific function: Unknown

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87082063, Length=604, Percent_Identity=40.0662251655629, Blast_Score=436, Evalue=1e-123,
Organism=Escherichia coli, GI1787762, Length=195, Percent_Identity=30.2564102564103, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 69574; Mature: 69574

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRPFLLTLSLALSFCANAAITESHGYAQFGVLKYPASFTHFDWVNPEAPKGGTLRMMAF
CCCHHHHHHHHHHHHHCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE
GTFDTLNPYTFKGSSPVSTGNFLQYGVNELNEPLMVGTGQYDPSGDEPTSSYGLIAQSVE
CCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHEECCC
YSEDRSWVVFNLRPQARFHDGKPITAYDVAFSYRTLLKDGHPQYRTALQEVQRVDILNRH
CCCCCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
RIRFVFKRSGNPLLILRLGELPVLPQHYWKDRDFKATTFEPPLGSGPYRITRVQPGRQLV
EEEEEEEECCCEEEEEEECCCCCCCHHHCCCCCCCEEECCCCCCCCCEEEEEECCHHHHH
FERVKDYWGKDLPVNRGKYNFDRVEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYD
HHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEHHHCCCCEEEEEEECCCCCCCCCC
FPAVANGQVIKAQIPHRIPTQTQGLFMNTRRAAFADIRVREALGLLFNFEWTNRTLFSDA
CCCCCCCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHCEEEEEEECCCEEEHHH
YDRSTSYYPNSEFSATGLPTGAEWLLLAPYRDQLPASLFTQPFAPSKTDGGGIPRETLRK
HCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCHHHHCCCCCCCCCCCCCCCHHHHHH
ALKLLAEAGWTLSDKGLLNADKQPLRFEILLVNPNLERILQPYIEDLRRLGINAGLRTVD
HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHH
RAQYKQRLDRFDFDMILMTLQQTLSPGLEQWQYFHSSQAAINGSKNYAGIANPVVDALLN
HHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHH
KLLAAQTRDDQVAAARALDRVLLSQHYSIPNWYLNNHRLAYRNRFAMVTTPPYTLGLRAW
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEECCEEEEECCCHHHHHHHH
WLKTLEKPR
HHHHHCCCC
>Mature Secondary Structure
MIRPFLLTLSLALSFCANAAITESHGYAQFGVLKYPASFTHFDWVNPEAPKGGTLRMMAF
CCCHHHHHHHHHHHHHCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE
GTFDTLNPYTFKGSSPVSTGNFLQYGVNELNEPLMVGTGQYDPSGDEPTSSYGLIAQSVE
CCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHEECCC
YSEDRSWVVFNLRPQARFHDGKPITAYDVAFSYRTLLKDGHPQYRTALQEVQRVDILNRH
CCCCCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
RIRFVFKRSGNPLLILRLGELPVLPQHYWKDRDFKATTFEPPLGSGPYRITRVQPGRQLV
EEEEEEEECCCEEEEEEECCCCCCCHHHCCCCCCCEEECCCCCCCCCEEEEEECCHHHHH
FERVKDYWGKDLPVNRGKYNFDRVEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYD
HHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEHHHCCCCEEEEEEECCCCCCCCCC
FPAVANGQVIKAQIPHRIPTQTQGLFMNTRRAAFADIRVREALGLLFNFEWTNRTLFSDA
CCCCCCCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHCEEEEEEECCCEEEHHH
YDRSTSYYPNSEFSATGLPTGAEWLLLAPYRDQLPASLFTQPFAPSKTDGGGIPRETLRK
HCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCHHHHCCCCCCCCCCCCCCCHHHHHH
ALKLLAEAGWTLSDKGLLNADKQPLRFEILLVNPNLERILQPYIEDLRRLGINAGLRTVD
HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHH
RAQYKQRLDRFDFDMILMTLQQTLSPGLEQWQYFHSSQAAINGSKNYAGIANPVVDALLN
HHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHH
KLLAAQTRDDQVAAARALDRVLLSQHYSIPNWYLNNHRLAYRNRFAMVTTPPYTLGLRAW
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEECCEEEEECCCHHHHHHHH
WLKTLEKPR
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA