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The map label for this gene is 66044945

Identifier: 66044945

GI number: 66044945

Start: 1907992

End: 1909101

Strand: Direct

Name: 66044945

Synonym: Psyr_1700

Alternate gene names: NA

Gene position: 1907992-1909101 (Clockwise)

Preceding gene: 66044944

Following gene: 66044946

Centisome position: 31.31

GC content: 61.26

Gene sequence:

>1110_bases
ATGAGTTGTCCGGCACCCGCACTCGATAACAGCCACCTGATAATAATAAGAGCGGAAAAGTCCATGCGTGAGTCTTTCCA
TCGTCGCACCCGGTTATACGCGGGCATGTCCCTGGCTGTCGTTACGTCATCCCTGTTTGCGCTGCCAGCCATGGCCGGTT
CCGAGGCGCTAGCCACTGCCGTTGCTGCAGACGCTCCTGTTTATGCCATCGAGTCGGCCAAAGCCTCTCGCGCGTTGTTG
CTGGACGTTGCCCATGCGGGTGCGCGGCTGGTCGTGGTGGGTGACCATGGGCATATTCTGCTTTCCGATGATCAGGGCAT
GACCTGGAGTCAGGCCCGCGTGCCTACCCGGCAGTTGTTGACGGCCGTGTTTTTTGTGGATGAACAGCACGGTTGGGCGG
TCGGTCACGACGCGCAGGTACTGGCCAGCAGCGATGGCGGCAAGAGCTGGAACAAGCAGTTCGAGGACTTGAAGCGCGAG
GCTCCGCTGCTGGATGTCTGGTTCAAGGACCTCGACAACGGCTTGGCCATCGGTGCCTACGGCCTGCTGCTGAGCACGGC
TGATGGCGGGCAGCACTGGGAAGATGTCAGCGACCGGCTGGACAACGAGGATCAATACCACCTGAACGGCATTGCTCAGG
TCAAGGATGCCGGCCTGTTCATTGTCGGCGAAGCGGGCAGCATGTTTCGCTCCCGCGACGAGGGGCAGACCTGGGAGAAA
ATCGACGGCCCGTATCAAGGCTCGTTATTCGGCGTGATCGGCACGGCTCAGCCGTCCACGTTGCTGGCCTATGGTCTGCG
CGGCAATCTGTTTCGCTCCAGCGATTTTGGTGACAGCTGGCAGCCGATCGAACTGAAGGGCGCGCGAGGGCCGCTCGAGT
TCGGCCTGGCCAGCGCTACGCTGCTGGCCAATGGCTCGCTGGTGCTGGTCGGCAATGGCGGCAGTGTCATGCGCAGCACC
GATGACGGGGAAACATTCGCGGTCTTCAATCGACCTGATCGCATCTCGCTGGCCGGGGTTACCGGCAATTCTCAGGGCAA
TCTGATTCTGGTAGGACAGGGCGGCGTTCGCCTCACCTCGTCGACGGGCGCCGATACGACCCAACAATAA

Upstream 100 bases:

>100_bases
AAGATAACGACATGTCGATTGTCAGGCATTTGCAAAGCTGCCTAGGATGGCCGAGCTTACAGACAGGTAACGCCATAGCG
CTGCGGGCGTCGACATCGAT

Downstream 100 bases:

>100_bases
GACCTTTCAGGGCGGGGATATTCAGGCATGAGCACGCACCAGCACGCGCAAGATCCGGATGAAAAAGCAACCTTCCTTGA
ACGCCTTATTTTCAACCATC

Product: BNR repeat-containing glycosyl hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSCPAPALDNSHLIIIRAEKSMRESFHRRTRLYAGMSLAVVTSSLFALPAMAGSEALATAVAADAPVYAIESAKASRALL
LDVAHAGARLVVVGDHGHILLSDDQGMTWSQARVPTRQLLTAVFFVDEQHGWAVGHDAQVLASSDGGKSWNKQFEDLKRE
APLLDVWFKDLDNGLAIGAYGLLLSTADGGQHWEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEK
IDGPYQGSLFGVIGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLANGSLVLVGNGGSVMRST
DDGETFAVFNRPDRISLAGVTGNSQGNLILVGQGGVRLTSSTGADTTQQ

Sequences:

>Translated_369_residues
MSCPAPALDNSHLIIIRAEKSMRESFHRRTRLYAGMSLAVVTSSLFALPAMAGSEALATAVAADAPVYAIESAKASRALL
LDVAHAGARLVVVGDHGHILLSDDQGMTWSQARVPTRQLLTAVFFVDEQHGWAVGHDAQVLASSDGGKSWNKQFEDLKRE
APLLDVWFKDLDNGLAIGAYGLLLSTADGGQHWEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEK
IDGPYQGSLFGVIGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLANGSLVLVGNGGSVMRST
DDGETFAVFNRPDRISLAGVTGNSQGNLILVGQGGVRLTSSTGADTTQQ
>Mature_368_residues
SCPAPALDNSHLIIIRAEKSMRESFHRRTRLYAGMSLAVVTSSLFALPAMAGSEALATAVAADAPVYAIESAKASRALLL
DVAHAGARLVVVGDHGHILLSDDQGMTWSQARVPTRQLLTAVFFVDEQHGWAVGHDAQVLASSDGGKSWNKQFEDLKREA
PLLDVWFKDLDNGLAIGAYGLLLSTADGGQHWEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEKI
DGPYQGSLFGVIGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLANGSLVLVGNGGSVMRSTD
DGETFAVFNRPDRISLAGVTGNSQGNLILVGQGGVRLTSSTGADTTQQ

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity [H]

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002860
- InterPro:   IPR016705 [H]

Pfam domain/function: PF02012 BNR [H]

EC number: NA

Molecular weight: Translated: 39243; Mature: 39112

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCPAPALDNSHLIIIRAEKSMRESFHRRTRLYAGMSLAVVTSSLFALPAMAGSEALATA
CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
VAADAPVYAIESAKASRALLLDVAHAGARLVVVGDHGHILLSDDQGMTWSQARVPTRQLL
HHCCCCEEEEECCCCCCEEEEEEECCCEEEEEEECCCEEEEECCCCCCCHHHCCCHHHHH
TAVFFVDEQHGWAVGHDAQVLASSDGGKSWNKQFEDLKREAPLLDVWFKDLDNGLAIGAY
EEEEEEECCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEE
GLLLSTADGGQHWEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEK
EEEEEECCCCCHHHHHHHHCCCCCCEEECCEEEEECCCEEEEECCCHHHHCCCCCCCHHH
IDGPYQGSLFGVIGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASAT
CCCCCCCEEEEEEECCCCCEEEEECCCCCEEECCCCCCCCCCEEEECCCCCHHHCCEEEE
LLANGSLVLVGNGGSVMRSTDDGETFAVFNRPDRISLAGVTGNSQGNLILVGQGGVRLTS
EEECCCEEEEECCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEECCCEEEEC
STGADTTQQ
CCCCCCCCC
>Mature Secondary Structure 
SCPAPALDNSHLIIIRAEKSMRESFHRRTRLYAGMSLAVVTSSLFALPAMAGSEALATA
CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
VAADAPVYAIESAKASRALLLDVAHAGARLVVVGDHGHILLSDDQGMTWSQARVPTRQLL
HHCCCCEEEEECCCCCCEEEEEEECCCEEEEEEECCCEEEEECCCCCCCHHHCCCHHHHH
TAVFFVDEQHGWAVGHDAQVLASSDGGKSWNKQFEDLKREAPLLDVWFKDLDNGLAIGAY
EEEEEEECCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEE
GLLLSTADGGQHWEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEK
EEEEEECCCCCHHHHHHHHCCCCCCEEECCEEEEECCCEEEEECCCHHHHCCCCCCCHHH
IDGPYQGSLFGVIGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASAT
CCCCCCCEEEEEEECCCCCEEEEECCCCCEEECCCCCCCCCCEEEECCCCCHHHCCEEEE
LLANGSLVLVGNGGSVMRSTDDGETFAVFNRPDRISLAGVTGNSQGNLILVGQGGVRLTS
EEECCCEEEEECCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEECCCEEEEC
STGADTTQQ
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]