Click here to switch to the map view.

The map label for this gene is yohD [H]

Identifier: 66044787

GI number: 66044787

Start: 1734939

End: 1735520

Strand: Direct

Name: yohD [H]

Synonym: Psyr_1541

Alternate gene names: 66044787

Gene position: 1734939-1735520 (Clockwise)

Preceding gene: 66044786

Following gene: 66044788

Centisome position: 28.47

GC content: 58.59

Gene sequence:

>582_bases
ATGTTCGAACATCTTGACCTCAACGCGCTGATCGCCGCCTACGGCTATTGGGTCATTTTCCTGGGCTGTTTGCTGGAAGG
CGAAACAGTGTTGATCCTTGGTGGTATGGCTGCGCACCAAGGTGCTCTGCAATTGCTGCAAGTGATCGGCTTGGCCACGT
TGGGCGGTATGCTCGGCGATCAGTTGCTATTCTGGACCGGACGTTATTCCGGGGAGCGCCTGCTGCCCAGACTCAAACGT
CACCAATCTGCCATCAAGCGGGTCGAGGGTCTTATCCAGCGTTACCCCACGACCTCCGTATTCGCTGTTCGCTTCCTCTA
CGGCATGCGCCTGGTGGGGCCTATGGTGATAGGTGCAAGTGGCCTGTCACCCTGGCGTTTCGCCCTGATCAATGTGCTGA
GTGCGGCAGTCTGGGCAACCCTGTTCGTCTGCGCCGGCTATTGGGCGGGGGAAGCGTTACAGCATCTACTCGGCGACCTG
AAGCCCTATCGTCTGCCGATCTTCCTCGCGGTGGTAGCACTGGTGATTCTTGCTGCGTTGGTGCGGTATGTGCACCGCCG
ATCCAGGGCAACGGATCGTTGA

Upstream 100 bases:

>100_bases
AGTGTTTGGTGAACATGGCGTACGGTACCTGGTGGGAAGAAAGTGACGAAGCTGGCATTTCAGCCTGGATTCATGTGATG
TCAGACGTACAGGAAAGACC

Downstream 100 bases:

>100_bases
GACGGTGGCGTCGGCATGCAAGGCTGTAGCGCGCCTTGCCGACGTCGAGGTCGACAGCCAGTACCGGGCTTTCCGTGCCC
TCGGCAAGCGGTCTTCAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MFEHLDLNALIAAYGYWVIFLGCLLEGETVLILGGMAAHQGALQLLQVIGLATLGGMLGDQLLFWTGRYSGERLLPRLKR
HQSAIKRVEGLIQRYPTTSVFAVRFLYGMRLVGPMVIGASGLSPWRFALINVLSAAVWATLFVCAGYWAGEALQHLLGDL
KPYRLPIFLAVVALVILAALVRYVHRRSRATDR

Sequences:

>Translated_193_residues
MFEHLDLNALIAAYGYWVIFLGCLLEGETVLILGGMAAHQGALQLLQVIGLATLGGMLGDQLLFWTGRYSGERLLPRLKR
HQSAIKRVEGLIQRYPTTSVFAVRFLYGMRLVGPMVIGASGLSPWRFALINVLSAAVWATLFVCAGYWAGEALQHLLGDL
KPYRLPIFLAVVALVILAALVRYVHRRSRATDR
>Mature_193_residues
MFEHLDLNALIAAYGYWVIFLGCLLEGETVLILGGMAAHQGALQLLQVIGLATLGGMLGDQLLFWTGRYSGERLLPRLKR
HQSAIKRVEGLIQRYPTTSVFAVRFLYGMRLVGPMVIGASGLSPWRFALINVLSAAVWATLFVCAGYWAGEALQHLLGDL
KPYRLPIFLAVVALVILAALVRYVHRRSRATDR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=159, Percent_Identity=46.5408805031447, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 21351; Mature: 21351

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEHLDLNALIAAYGYWVIFLGCLLEGETVLILGGMAAHQGALQLLQVIGLATLGGMLGD
CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
QLLFWTGRYSGERLLPRLKRHQSAIKRVEGLIQRYPTTSVFAVRFLYGMRLVGPMVIGAS
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
GLSPWRFALINVLSAAVWATLFVCAGYWAGEALQHLLGDLKPYRLPIFLAVVALVILAAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VRYVHRRSRATDR
HHHHHHHHCCCCC
>Mature Secondary Structure
MFEHLDLNALIAAYGYWVIFLGCLLEGETVLILGGMAAHQGALQLLQVIGLATLGGMLGD
CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
QLLFWTGRYSGERLLPRLKRHQSAIKRVEGLIQRYPTTSVFAVRFLYGMRLVGPMVIGAS
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
GLSPWRFALINVLSAAVWATLFVCAGYWAGEALQHLLGDLKPYRLPIFLAVVALVILAAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VRYVHRRSRATDR
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]