Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 66044739

GI number: 66044739

Start: 1680090

End: 1681052

Strand: Direct

Name: xerC [H]

Synonym: Psyr_1492

Alternate gene names: 66044739

Gene position: 1680090-1681052 (Clockwise)

Preceding gene: 66044737

Following gene: 66044740

Centisome position: 27.57

GC content: 58.98

Gene sequence:

>963_bases
ATGCAAGAACTGACGAAAGCCCATCACAATGATCACCGTCGGCTCACTTCGGTCGAATTTCAGACGCTGGCCCAAGTTCC
GGCCGCCGTCGAGTGGTTTGCCAACTTGGACAACCCTCGGACCCGACGTGCCTACCAAAATGACCTGGAAGACTTCTGCG
GTTTTGTTGGATTGGTTTCGGCCGATGAATTTCGCGTCGTGACCCGATCACACGTTCTGGCCTGGCGTGCCCAGCTCGAG
CATCGCGGCTTAGCCGGAGCCACGATCCGGCGCAAATTGGCCGCGCTGGCCAGCCTCTTTGATCACCTCCTGGAAAGCAA
CGCGATCGCCGGCGGCAATCCCGTGCATGGTGTAAAACGACCGAAGATAGAAAGCAACGAAGGCAAGACACCGGCACTGG
GCGATCACCAGGCTAAAGCGCTGCTCGACGCGCCGGATGAAACAACACTTAAAGGGCAGCGCGACCGGGCGATATTGGCT
GTTCTTCTCTATCACGGGCTGCGCCGTGAAGAAGCAGCGCTGCTGCAGGTGAGCGACATCCAGGAGCGCCGCGGCATTCA
GCATTTAAAGGTCCACGGCAAAGGCGGAAAGGTACGTTACCTGCCGTTGCACCCCGTGGCGGCCGGTCGTATTCACCTGT
TTCTGGAAAGCTCAGGGCATCATTTGGCGGACAGGAAGGTGCCATTGTTCATGCCGCTGCGGGGCAAGCTGACCGGCGCC
GGCATCACGGCTAACGGCATCTATACCGTGGTGGCGGCGTATGCGAAGAAGGCCGGGATCGAGGTCGACGGCTTAGGGGT
CCACGGACTCAGAGCAACCGCAGCTACCAATGCACTGGAGCATGAAGCCGACATCGCCAAGGTCCAGGCCTGGCTCGGCC
ATGCCAATATCAGCACCACCAAGATCTATGATCGCCGGGAGAACCGGCCGGAGGATTCACCCACCTATAAAGTGAAGTAT
TAA

Upstream 100 bases:

>100_bases
TTGCCGTTTGTCGGTTTCAGGACCAGCGACCGCAACTGACGTTGCTTTCGCGACTAGATCCATGACCAATGATCGCAACC
GGGTCAATCGAGAGAACGAC

Downstream 100 bases:

>100_bases
CCGCCATTTGCCGGCTTGGTTAATGCTCAACCTGACTTTTTTGTAACCCTCAACTCAGCCAACTGAAAGCCTCTACTCGT
TACCTTGGACCCAGCGGCAT

Product: Phage integrase:Phage integrase, N-terminal SAM-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MQELTKAHHNDHRRLTSVEFQTLAQVPAAVEWFANLDNPRTRRAYQNDLEDFCGFVGLVSADEFRVVTRSHVLAWRAQLE
HRGLAGATIRRKLAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDETTLKGQRDRAILA
VLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPVAAGRIHLFLESSGHHLADRKVPLFMPLRGKLTGA
GITANGIYTVVAAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIYDRRENRPEDSPTYKVKY

Sequences:

>Translated_320_residues
MQELTKAHHNDHRRLTSVEFQTLAQVPAAVEWFANLDNPRTRRAYQNDLEDFCGFVGLVSADEFRVVTRSHVLAWRAQLE
HRGLAGATIRRKLAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDETTLKGQRDRAILA
VLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPVAAGRIHLFLESSGHHLADRKVPLFMPLRGKLTGA
GITANGIYTVVAAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIYDRRENRPEDSPTYKVKY
>Mature_320_residues
MQELTKAHHNDHRRLTSVEFQTLAQVPAAVEWFANLDNPRTRRAYQNDLEDFCGFVGLVSADEFRVVTRSHVLAWRAQLE
HRGLAGATIRRKLAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDETTLKGQRDRAILA
VLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPVAAGRIHLFLESSGHHLADRKVPLFMPLRGKLTGA
GITANGIYTVVAAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIYDRRENRPEDSPTYKVKY

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=266, Percent_Identity=30.4511278195489, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789261, Length=222, Percent_Identity=32.4324324324324, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35300; Mature: 35300

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQELTKAHHNDHRRLTSVEFQTLAQVPAAVEWFANLDNPRTRRAYQNDLEDFCGFVGLVS
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
ADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKLAALASLFDHLLESNAIAGGNPVHGVKR
CCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PKIESNEGKTPALGDHQAKALLDAPDETTLKGQRDRAILAVLLYHGLRREEAALLQVSDI
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHEEHHHH
QERRGIQHLKVHGKGGKVRYLPLHPVAAGRIHLFLESSGHHLADRKVPLFMPLRGKLTGA
HHHCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCEECC
GITANGIYTVVAAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTT
CEECCHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
KIYDRRENRPEDSPTYKVKY
EEEHHHCCCCCCCCCEEEEC
>Mature Secondary Structure
MQELTKAHHNDHRRLTSVEFQTLAQVPAAVEWFANLDNPRTRRAYQNDLEDFCGFVGLVS
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
ADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKLAALASLFDHLLESNAIAGGNPVHGVKR
CCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PKIESNEGKTPALGDHQAKALLDAPDETTLKGQRDRAILAVLLYHGLRREEAALLQVSDI
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHEEHHHH
QERRGIQHLKVHGKGGKVRYLPLHPVAAGRIHLFLESSGHHLADRKVPLFMPLRGKLTGA
HHHCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCEECC
GITANGIYTVVAAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTT
CEECCHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
KIYDRRENRPEDSPTYKVKY
EEEHHHCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA