Click here to switch to the map view.

The map label for this gene is rcsF [H]

Identifier: 66044636

GI number: 66044636

Start: 1570005

End: 1570697

Strand: Reverse

Name: rcsF [H]

Synonym: Psyr_1388

Alternate gene names: 66044636

Gene position: 1570697-1570005 (Counterclockwise)

Preceding gene: 66044637

Following gene: 66044634

Centisome position: 25.78

GC content: 65.51

Gene sequence:

>693_bases
ATGAGCTACAACGTCTCCCCTGTCGGCTTCGTGCGCTCCTGCTTCAAGGAGAAGTTTGCCATCCCGCGCCAGCCACAGCT
TGCACCGGCGGCACGCGGCGTGCTGGAGCTGGTGGCACCGTTCGATCAGGGTGAAGCGGTTCAGGGGCTGGAACAGGTCA
GTCACGTCTGGCTGCTGTTTCTGTTCCACCTGACGCTGGAAGACAAGCCACGCCTGAAGGTGCGCCCGCCGCGCCTGGGT
GGCAACCAGTCGATGGGCGTGTTCGCTACCCGCGCAACCCATCGCCCCAATGGCATCGGCCAGTCGGTGGTCAAGCTGGA
CAAGGTCGAGCCCGGGCGACTCTGGCTGTCCGGCATCGACCTGCTGGATGGCACGCCGGTGCTGGACATCAAGCCCTATG
TGCCCTACGCCGACGCAATCGCCGACGCGACCAACCACATCGCCAGTGCTGCGCCAGACCTGATACCGGTGCGCTGGCAG
GAGGCCGCGCTGCAACAGGCTCGTGAACACGCGTTGCGCCTGAACGAGCCGCTGGTCGAACTGATCGAGCAGTGCCTGGC
CCAGGACCCGCGCCCGGCCTATCAGCTGCCCACGCCGGAACGTCGCTATGGTGCTCAGTTCTGGGATCTGGACGTGCGCT
GGCACTACCCGCAGGCCGGCGTGATTTGCGTGCTTGAAGTGCTGCTCGCCTGA

Upstream 100 bases:

>100_bases
CGCAAGGTCGGACACACCAACTACCGCGCCTGTGGCGATCAACTGCTGCGCAATTTCCTCAAGGGCCTGACCCTGCGCGT
GCGTGGCTGAATCGGTCCCG

Downstream 100 bases:

>100_bases
GGCTGCTGCTGATCTGAACTGATCGGGGCAACAAATCCCGCACAACAAAAACCCGCCTGATCCACTCAAGGAAGAGGCGG
GTCTTGTGCAGCCGGCTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSYNVSPVGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGEAVQGLEQVSHVWLLFLFHLTLEDKPRLKVRPPRLG
GNQSMGVFATRATHRPNGIGQSVVKLDKVEPGRLWLSGIDLLDGTPVLDIKPYVPYADAIADATNHIASAAPDLIPVRWQ
EAALQQAREHALRLNEPLVELIEQCLAQDPRPAYQLPTPERRYGAQFWDLDVRWHYPQAGVICVLEVLLA

Sequences:

>Translated_230_residues
MSYNVSPVGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGEAVQGLEQVSHVWLLFLFHLTLEDKPRLKVRPPRLG
GNQSMGVFATRATHRPNGIGQSVVKLDKVEPGRLWLSGIDLLDGTPVLDIKPYVPYADAIADATNHIASAAPDLIPVRWQ
EAALQQAREHALRLNEPLVELIEQCLAQDPRPAYQLPTPERRYGAQFWDLDVRWHYPQAGVICVLEVLLA
>Mature_229_residues
SYNVSPVGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGEAVQGLEQVSHVWLLFLFHLTLEDKPRLKVRPPRLGG
NQSMGVFATRATHRPNGIGQSVVKLDKVEPGRLWLSGIDLLDGTPVLDIKPYVPYADAIADATNHIASAAPDLIPVRWQE
AALQQAREHALRLNEPLVELIEQCLAQDPRPAYQLPTPERRYGAQFWDLDVRWHYPQAGVICVLEVLLA

Specific function: Unknown

COG id: COG1720

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0066 (virR) family [H]

Homologues:

Organism=Homo sapiens, GI118600979, Length=137, Percent_Identity=48.9051094890511, Blast_Score=135, Evalue=3e-32,
Organism=Escherichia coli, GI1786393, Length=225, Percent_Identity=46.2222222222222, Blast_Score=189, Evalue=2e-49,
Organism=Drosophila melanogaster, GI24586408, Length=135, Percent_Identity=46.6666666666667, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI45552503, Length=135, Percent_Identity=46.6666666666667, Blast_Score=125, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001378 [H]

Pfam domain/function: PF01980 UPF0066 [H]

EC number: NA

Molecular weight: Translated: 25678; Mature: 25547

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01318 UPF0066

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYNVSPVGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGEAVQGLEQVSHVWLLF
CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LFHLTLEDKPRLKVRPPRLGGNQSMGVFATRATHRPNGIGQSVVKLDKVEPGRLWLSGID
HHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCEEEEECCH
LLDGTPVLDIKPYVPYADAIADATNHIASAAPDLIPVRWQEAALQQAREHALRLNEPLVE
HCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHCCCHHHH
LIEQCLAQDPRPAYQLPTPERRYGAQFWDLDVRWHYPQAGVICVLEVLLA
HHHHHHCCCCCCCCCCCCCHHHHCCEEEEEEEEEECCCCHHHHHHHHHHC
>Mature Secondary Structure 
SYNVSPVGFVRSCFKEKFAIPRQPQLAPAARGVLELVAPFDQGEAVQGLEQVSHVWLLF
CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LFHLTLEDKPRLKVRPPRLGGNQSMGVFATRATHRPNGIGQSVVKLDKVEPGRLWLSGID
HHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCEEEEECCH
LLDGTPVLDIKPYVPYADAIADATNHIASAAPDLIPVRWQEAALQQAREHALRLNEPLVE
HCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHCCCHHHH
LIEQCLAQDPRPAYQLPTPERRYGAQFWDLDVRWHYPQAGVICVLEVLLA
HHHHHHCCCCCCCCCCCCCHHHHCCEEEEEEEEEECCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]