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The map label for this gene is ygaD [C]

Identifier: 66044625

GI number: 66044625

Start: 1561808

End: 1562386

Strand: Direct

Name: ygaD [C]

Synonym: Psyr_1377

Alternate gene names: 66044625

Gene position: 1561808-1562386 (Clockwise)

Preceding gene: 66044622

Following gene: 66044626

Centisome position: 25.63

GC content: 62.87

Gene sequence:

>579_bases
ATGCTCAGTACCGTTGCGCGGCAGGTGCGCGGCTCCAGGATTCACCTTTACAGGCTTTCCAGCATGAACGATTACACCGT
GAGTGAGATAACCGGGCTTGCCGATACGCTTGGCAGGCTTCTCGACGCAATGAACGCGCAAGTGACCACTGCCGAATCCT
GTACGGGGGGCGGAATCGCCGAAGCGATCACGCGCATTGCCGGCAGCTCGGCGTGGTTCGAAGCCGGTTACGTGACCTAT
TCGAACGCCCAGAAGACCCGTCAGTTAGGGGTGCCCGAGGTATTGTTCGAACAGGTCGGGGCGGTCAGCCAGCCGGTCGT
CGAAGCCATGGTGCGAGGCGCGCAGCGTGAAAGCGGTGCACGATTCGCCGTCGCGGTCAGCGGTGTCGCAGGCCCCGGCG
GCGGTTCGCCGGACAAACCGGTCGGTACTGTGTGGCTGTGCTGGGGCAAGGATGATGCGTCGGTCAGCCGCTGTTACCGG
TTCGATGGCGACCGTGATCAGGTTCGTCGACAGACGGTCGAAGCCGCGCTGCACGGGCTGATACAGCTTGCGCGCGGAGA
AATGCCAAAACAGGGGTAG

Upstream 100 bases:

>100_bases
ACGCTTCATCCCTTTGGAAGAAGCCAGAAAAAGGCCGAGAGAAACCACGGTGGAAACGGTCAAAAAGCCCGGGCGCAGGA
AAAATGACAAGTAAAGCAGC

Downstream 100 bases:

>100_bases
GCGCGCGCTCACTGCTGTGGAATAATACTGTCTACTTATACAGGTGTTGTGGCCATCAAGGCCCTAATTGAATTTGATTA
CGTGAGGACTTCAATGGACG

Product: CinA, C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MLSTVARQVRGSRIHLYRLSSMNDYTVSEITGLADTLGRLLDAMNAQVTTAESCTGGGIAEAITRIAGSSAWFEAGYVTY
SNAQKTRQLGVPEVLFEQVGAVSQPVVEAMVRGAQRESGARFAVAVSGVAGPGGGSPDKPVGTVWLCWGKDDASVSRCYR
FDGDRDQVRRQTVEAALHGLIQLARGEMPKQG

Sequences:

>Translated_192_residues
MLSTVARQVRGSRIHLYRLSSMNDYTVSEITGLADTLGRLLDAMNAQVTTAESCTGGGIAEAITRIAGSSAWFEAGYVTY
SNAQKTRQLGVPEVLFEQVGAVSQPVVEAMVRGAQRESGARFAVAVSGVAGPGGGSPDKPVGTVWLCWGKDDASVSRCYR
FDGDRDQVRRQTVEAALHGLIQLARGEMPKQG
>Mature_192_residues
MLSTVARQVRGSRIHLYRLSSMNDYTVSEITGLADTLGRLLDAMNAQVTTAESCTGGGIAEAITRIAGSSAWFEAGYVTY
SNAQKTRQLGVPEVLFEQVGAVSQPVVEAMVRGAQRESGARFAVAVSGVAGPGGGSPDKPVGTVWLCWGKDDASVSRCYR
FDGDRDQVRRQTVEAALHGLIQLARGEMPKQG

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=158, Percent_Identity=52.5316455696203, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI1787818, Length=139, Percent_Identity=34.5323741007194, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 20422; Mature: 20422

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTVARQVRGSRIHLYRLSSMNDYTVSEITGLADTLGRLLDAMNAQVTTAESCTGGGIA
CHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
EAITRIAGSSAWFEAGYVTYSNAQKTRQLGVPEVLFEQVGAVSQPVVEAMVRGAQRESGA
HHHHHHHCCCCCCCCCCEEECCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
RFAVAVSGVAGPGGGSPDKPVGTVWLCWGKDDASVSRCYRFDGDRDQVRRQTVEAALHGL
EEEEEEECCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IQLARGEMPKQG
HHHHHCCCCCCC
>Mature Secondary Structure
MLSTVARQVRGSRIHLYRLSSMNDYTVSEITGLADTLGRLLDAMNAQVTTAESCTGGGIA
CHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
EAITRIAGSSAWFEAGYVTYSNAQKTRQLGVPEVLFEQVGAVSQPVVEAMVRGAQRESGA
HHHHHHHCCCCCCCCCCEEECCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
RFAVAVSGVAGPGGGSPDKPVGTVWLCWGKDDASVSRCYRFDGDRDQVRRQTVEAALHGL
EEEEEEECCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IQLARGEMPKQG
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA