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The map label for this gene is nlpD [C]

Identifier: 66044621

GI number: 66044621

Start: 1555731

End: 1556597

Strand: Direct

Name: nlpD [C]

Synonym: Psyr_1373

Alternate gene names: 66044621

Gene position: 1555731-1556597 (Clockwise)

Preceding gene: 66044620

Following gene: 66044622

Centisome position: 25.53

GC content: 55.82

Gene sequence:

>867_bases
GTGAGTCTCACAGTCATTCAGCAGCTCAGGTCTTCAAGAAGTTATCAGCGTCTGGTGATTGGCATTGCTCTCAGTGTCCT
TTTGGTCGGCTGCTCCAGCTCGCCTTCAGGCGGCGTTCGCGTGGTCGATCGCAACGGCAATGCAGTCGCCCAGCGCCCGA
CGGTGACCACCGGCCAGTATGTGGTCAGGCGCGGTGACACACTTTTTTCCATTGCATTTCGTTACGGCTGGGACTGGAAG
GCGCTGGCTGCCCGTAACCAGATCCCGGAGCCGTTTACCATCAAGCCCGGTCAGACAATTCGCTTTGACGGACGCTCCTC
TTCAACGCCGAACGTGGTTTCAACGTCCGGCGCGGGGCGTCCGGTGACGTCTACATCGACCAGTACCGGCAGTTCCGGAT
CCGTCAAAACCACGGTCATGTCCAAACCCGTTGCGGTTGTACCTGTGGTTATACCTCCGTCGGCGACCACCGGGACAGGC
CCGGCCGGCAAGTCTCCGACGGGTTGGACCTGGCCTTCGAGTGGCATTTTGATAGGAAAATTTTCCTCAAACGGCAGTTT
GAATAAAGGAATTGATATCGCTGGTGATTTGGGACAGCCTGTTTTGGCAGCGTCTGATGGTTCAGTTGTTTACGCCGGAA
GTGGATTACGGGGCTACGGCGAATTGATCATCATCAAACACAGCGATACCTACGTCAGTGCCTACGGTCATAACCGCAGG
CTTTTGGTACGGGAAGGACAACAGGTCAAGGCAGGGCAGACGATTGCCGAAATGGGGTCAACAGGAACTGACCGGGTGAA
ACTGCATTTTGAGATTCGCCGCCAAGGGAAACCTGTAGATCCGTTAGGATTCTTGCCACGTCGTTGA

Upstream 100 bases:

>100_bases
CTTAACAGCGTTTTTCAGCGGCTTATCACTGGCTGCCCGTTGCTATTACGACACAATAGGCATCTTTTTTGAATTCAGTC
ACCAGTAAAGGGAGTGGCGG

Downstream 100 bases:

>100_bases
TAGTTGTCAGCCTGTTCCTGGCGTAGTAGGAACAGGCTCAAGCGTTGCCATGGAACCAGGCGATGCTGGAGCTTGAGGTC
GAACTCACCAAAGGACTAAA

Product: peptidoglycan-binding LysM:peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MSLTVIQQLRSSRSYQRLVIGIALSVLLVGCSSSPSGGVRVVDRNGNAVAQRPTVTTGQYVVRRGDTLFSIAFRYGWDWK
ALAARNQIPEPFTIKPGQTIRFDGRSSSTPNVVSTSGAGRPVTSTSTSTGSSGSVKTTVMSKPVAVVPVVIPPSATTGTG
PAGKSPTGWTWPSSGILIGKFSSNGSLNKGIDIAGDLGQPVLAASDGSVVYAGSGLRGYGELIIIKHSDTYVSAYGHNRR
LLVREGQQVKAGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLGFLPRR

Sequences:

>Translated_288_residues
MSLTVIQQLRSSRSYQRLVIGIALSVLLVGCSSSPSGGVRVVDRNGNAVAQRPTVTTGQYVVRRGDTLFSIAFRYGWDWK
ALAARNQIPEPFTIKPGQTIRFDGRSSSTPNVVSTSGAGRPVTSTSTSTGSSGSVKTTVMSKPVAVVPVVIPPSATTGTG
PAGKSPTGWTWPSSGILIGKFSSNGSLNKGIDIAGDLGQPVLAASDGSVVYAGSGLRGYGELIIIKHSDTYVSAYGHNRR
LLVREGQQVKAGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLGFLPRR
>Mature_287_residues
SLTVIQQLRSSRSYQRLVIGIALSVLLVGCSSSPSGGVRVVDRNGNAVAQRPTVTTGQYVVRRGDTLFSIAFRYGWDWKA
LAARNQIPEPFTIKPGQTIRFDGRSSSTPNVVSTSGAGRPVTSTSTSTGSSGSVKTTVMSKPVAVVPVVIPPSATTGTGP
AGKSPTGWTWPSSGILIGKFSSNGSLNKGIDIAGDLGQPVLAASDGSVVYAGSGLRGYGELIIIKHSDTYVSAYGHNRRL
LVREGQQVKAGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLGFLPRR

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=258, Percent_Identity=43.4108527131783, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI87082174, Length=269, Percent_Identity=38.6617100371747, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI87082297, Length=145, Percent_Identity=39.3103448275862, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081989, Length=103, Percent_Identity=41.747572815534, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 30327; Mature: 30196

Theoretical pI: Translated: 11.27; Mature: 11.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTVIQQLRSSRSYQRLVIGIALSVLLVGCSSSPSGGVRVVDRNGNAVAQRPTVTTGQY
CCHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCEEEECCCCCCCCE
VVRRGDTLFSIAFRYGWDWKALAARNQIPEPFTIKPGQTIRFDGRSSSTPNVVSTSGAGR
EEECCCEEEEEEEEECCCHHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCEEECCCCCC
PVTSTSTSTGSSGSVKTTVMSKPVAVVPVVIPPSATTGTGPAGKSPTGWTWPSSGILIGK
CCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE
FSSNGSLNKGIDIAGDLGQPVLAASDGSVVYAGSGLRGYGELIIIKHSDTYVSAYGHNRR
ECCCCCCCCCCEEECCCCCCEEEECCCCEEEECCCCCCCCCEEEEEECCCEEEECCCCEE
LLVREGQQVKAGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLGFLPRR
EEEECCCCCCCCCHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLTVIQQLRSSRSYQRLVIGIALSVLLVGCSSSPSGGVRVVDRNGNAVAQRPTVTTGQY
CHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCEEEECCCCCCCCE
VVRRGDTLFSIAFRYGWDWKALAARNQIPEPFTIKPGQTIRFDGRSSSTPNVVSTSGAGR
EEECCCEEEEEEEEECCCHHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCEEECCCCCC
PVTSTSTSTGSSGSVKTTVMSKPVAVVPVVIPPSATTGTGPAGKSPTGWTWPSSGILIGK
CCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE
FSSNGSLNKGIDIAGDLGQPVLAASDGSVVYAGSGLRGYGELIIIKHSDTYVSAYGHNRR
ECCCCCCCCCCEEECCCCCCEEEECCCCEEEECCCCCCCCCEEEEEECCCEEEECCCCEE
LLVREGQQVKAGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLGFLPRR
EEEECCCCCCCCCHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]