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The map label for this gene is ygiP [C]

Identifier: 66044614

GI number: 66044614

Start: 1549471

End: 1550367

Strand: Reverse

Name: ygiP [C]

Synonym: Psyr_1366

Alternate gene names: 66044614

Gene position: 1550367-1549471 (Counterclockwise)

Preceding gene: 66044623

Following gene: 66044590

Centisome position: 25.44

GC content: 61.65

Gene sequence:

>897_bases
ATGTACACCAATCGTTGGGAAGGTCTGGATGAGTTCGTTGCTGTCGCGGAATGCGGGCAGTTCACGGCGGCGGCTCAGCG
GCTCGGGGTCTCCTCGTCGCACGTCAGCCGTCAGATCGTGCGTCTTGAAGAACGCCTGCAGACCCGTCTGCTCTACCGCA
GTACACGCAAGGTCGCACTCACCGAAGCCGGGCAGACCTTTCTGCATCACTGCCAGCGCCTGCAGGACGGCCGTGAAGAA
GCACTGCGCGCCGTGGGCGATCTGGCCAGCGAACCGAAGGGGTTGTTGCGCATGACCTGCGCCGTGGCGTACGGGGAGCG
CTTCATCACGCCGCTGGTCACGCGTTTCATGGATGTGTACCCACACCTGCGGGTCGATATCGAGCTGAGCAACGACACGC
TGGATCTGGTTCATGAAGGCATGGACCTGGCGATTCGTCTGGGTCGGCTGCAGGATTCGCGTCTGGTCGCAACCCGCCTC
GCGCCACGGCAGATGTACCTGTGCGCTTCGCCGTCCTACATCCAGCGTTACGGCCGGCCGCACAGCCTTTCAGAACTGAA
TCGCCACAATTGCCTGATCGGTGGCAGCGACACCTGGCAGCTTCAGCAGAACGGGCGTGAATTTTCCCAACGTGTGCAAG
GCAACTGGCGCTGTAACAGCGGCCAGGCCGTGCTGGATGCCGCGCTGCACGGGGTCGGCTTATGCCAGTTGCCGGATTAC
TACGTGCAGAAACACCTCAACGACGGCACGCTGGTGTCGTTGCTGGAGGCACATCAACCGCCCAACACCGCCGTGTGGGC
GCTGTATCCGCAGCAAAGGCACCTGTCACCCAAGGTGCGCAAGCTGGTGGATTATCTTAAGGAAGGGTTGGCGATGCGGG
ATGAATATCGCCAATAG

Upstream 100 bases:

>100_bases
CTTCTCCGACGGGTAAAAACAAGGATTGCAGTGTAGTACAGTGCCAATTGACGAGTAATGCGGCTAAAAGCAAAACATTA
ATGCTGTACAGGGATAATCG

Downstream 100 bases:

>100_bases
CGAAAACCTAGCGCCCGAACTCGCTGCGGCGCTGACGTAGCCATTCCAGGTCCTCGGGGCGAGTGACCTTGATGTTATCC
GAGCGCCCCTCGATCAGGCG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MYTNRWEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQTFLHHCQRLQDGREE
ALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRVDIELSNDTLDLVHEGMDLAIRLGRLQDSRLVATRL
APRQMYLCASPSYIQRYGRPHSLSELNRHNCLIGGSDTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQLPDY
YVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKEGLAMRDEYRQ

Sequences:

>Translated_298_residues
MYTNRWEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQTFLHHCQRLQDGREE
ALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRVDIELSNDTLDLVHEGMDLAIRLGRLQDSRLVATRL
APRQMYLCASPSYIQRYGRPHSLSELNRHNCLIGGSDTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQLPDY
YVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKEGLAMRDEYRQ
>Mature_298_residues
MYTNRWEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQTFLHHCQRLQDGREE
ALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRVDIELSNDTLDLVHEGMDLAIRLGRLQDSRLVATRL
APRQMYLCASPSYIQRYGRPHSLSELNRHNCLIGGSDTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQLPDY
YVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKEGLAMRDEYRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=34.9315068493151, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=32.7526132404181, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI87081978, Length=286, Percent_Identity=32.8671328671329, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=31.4487632508834, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789639, Length=288, Percent_Identity=30.9027777777778, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=30.2816901408451, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=27.9310344827586, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790011, Length=275, Percent_Identity=27.6363636363636, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786448, Length=272, Percent_Identity=25, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=27.8761061946903, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI145693105, Length=165, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=261, Percent_Identity=26.0536398467433, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789173, Length=248, Percent_Identity=28.2258064516129, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33984; Mature: 33984

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTNRWEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEAGQTFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVY
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PHLRVDIELSNDTLDLVHEGMDLAIRLGRLQDSRLVATRLAPRQMYLCASPSYIQRYGRP
CCEEEEEEECCCHHHHHHCCHHHHHHHCCCCCCHHHHHHCCCHHEEEECCCHHHHHCCCC
HSLSELNRHNCLIGGSDTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQLPDY
CCHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHCCCCCCCCHH
YVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKEGLAMRDEYRQ
HHHHHCCCCHHHHHHHHCCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYTNRWEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEAGQTFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVY
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PHLRVDIELSNDTLDLVHEGMDLAIRLGRLQDSRLVATRLAPRQMYLCASPSYIQRYGRP
CCEEEEEEECCCHHHHHHCCHHHHHHHCCCCCCHHHHHHCCCHHEEEECCCHHHHHCCCC
HSLSELNRHNCLIGGSDTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQLPDY
CCHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHCCCCCCCCHH
YVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKEGLAMRDEYRQ
HHHHHCCCCHHHHHHHHCCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]