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The map label for this gene is ypjD [H]

Identifier: 66044528

GI number: 66044528

Start: 1446323

End: 1447177

Strand: Reverse

Name: ypjD [H]

Synonym: Psyr_1280

Alternate gene names: 66044528

Gene position: 1447177-1446323 (Counterclockwise)

Preceding gene: 66044542

Following gene: 66044527

Centisome position: 23.75

GC content: 58.6

Gene sequence:

>855_bases
ATGCCAAACTCAGCGTCTTTTCAGGCCCGTCCATCAGGATCTATGTCCCCTTTGCCACCCAGCCTGCTTCCCAGCCTCGC
CGCCGCCATCATTTATGCCGCTGCGACCGTCTATCAGAGCCTGCGTCTGAGCCAGGCCGTCAAGCCCGACAAGCGGCTGC
TTTGCCTGCTTGGAGCGTTGGCGGTCATCGCACATGCCATTGGTCTGTTTTCCCAATTGACGCATTCCGTCGGTCTTGGT
CTGGACTTCTTCAACTCCGCCAGCCTTATCGCGGCGTCGGTGATCGTCGTCACCCTGATCGCCACATCGCGCATCCCGGT
GGAAAACCTGCTGGTGTTGTTGTTCCCTTTAGGGATGGTCACTGTACTGCTCGCCCAGTTCGCCCCTAGCGGCACTGTGC
AGCCGATCATGGAAGAGCCCGGCATCCTCAGCCATATCCTGCTCTCTCTGCTGGCTTACGGGATGTTTACCATTGCTGCA
TTCCAGGCGCTGCTGTTGCTGTTGCAGGACTACCGCCTCAAGCACAAGCACCCTTCCGGGCTGATCAAGAACTTCCCGCC
GCTGCAAACCATGGAAAGTCTGCTGTTCGGCTTTCTGTGGGCTGGCTGGTCGCTGCTCTCGCTGTCGCTGATTTCCGGCT
GGCTGTTCGTCGAAAACCTGTTTGCCCAGCATCTGGTGCACAAGACCCTGCTGGCCTGTCTGGCCTGGATAGTGTTCAGT
GTGCTGCTGTGGGGGCGTAACCGCCTTGGATGGCGTGGTCATAAGGCCATTCGCTGGACACTGGGCGGTTTCTGCCTGCT
GATGCTCGCCTATTTCGGCAGCAAGCTGGTACGCGAATTCATCCTGCACATCTGA

Upstream 100 bases:

>100_bases
GCGAGCCTGCGGCTTGAGCAGGTCGCGGATTATAGCGAAGACTCCGTCGCACGGACACCACGCAGACTGCTTCTGTGGTC
TTTCGTGATTTGCCGGTTCT

Downstream 100 bases:

>100_bases
CGGGCCCTGATCATGGATAATCTGCCCCTGGGCCCGTTGCTCGGTGTCCTCGCCCTACTGCTGCTGTGGGCCGGTCTGCT
GACTGCGGTCGAAGCCGCTC

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MPNSASFQARPSGSMSPLPPSLLPSLAAAIIYAAATVYQSLRLSQAVKPDKRLLCLLGALAVIAHAIGLFSQLTHSVGLG
LDFFNSASLIAASVIVVTLIATSRIPVENLLVLLFPLGMVTVLLAQFAPSGTVQPIMEEPGILSHILLSLLAYGMFTIAA
FQALLLLLQDYRLKHKHPSGLIKNFPPLQTMESLLFGFLWAGWSLLSLSLISGWLFVENLFAQHLVHKTLLACLAWIVFS
VLLWGRNRLGWRGHKAIRWTLGGFCLLMLAYFGSKLVREFILHI

Sequences:

>Translated_284_residues
MPNSASFQARPSGSMSPLPPSLLPSLAAAIIYAAATVYQSLRLSQAVKPDKRLLCLLGALAVIAHAIGLFSQLTHSVGLG
LDFFNSASLIAASVIVVTLIATSRIPVENLLVLLFPLGMVTVLLAQFAPSGTVQPIMEEPGILSHILLSLLAYGMFTIAA
FQALLLLLQDYRLKHKHPSGLIKNFPPLQTMESLLFGFLWAGWSLLSLSLISGWLFVENLFAQHLVHKTLLACLAWIVFS
VLLWGRNRLGWRGHKAIRWTLGGFCLLMLAYFGSKLVREFILHI
>Mature_283_residues
PNSASFQARPSGSMSPLPPSLLPSLAAAIIYAAATVYQSLRLSQAVKPDKRLLCLLGALAVIAHAIGLFSQLTHSVGLGL
DFFNSASLIAASVIVVTLIATSRIPVENLLVLLFPLGMVTVLLAQFAPSGTVQPIMEEPGILSHILLSLLAYGMFTIAAF
QALLLLLQDYRLKHKHPSGLIKNFPPLQTMESLLFGFLWAGWSLLSLSLISGWLFVENLFAQHLVHKTLLACLAWIVFSV
LLWGRNRLGWRGHKAIRWTLGGFCLLMLAYFGSKLVREFILHI

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=233, Percent_Identity=33.9055793991416, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 31051; Mature: 30919

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNSASFQARPSGSMSPLPPSLLPSLAAAIIYAAATVYQSLRLSQAVKPDKRLLCLLGAL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AVIAHAIGLFSQLTHSVGLGLDFFNSASLIAASVIVVTLIATSRIPVENLLVLLFPLGMV
HHHHHHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
TVLLAQFAPSGTVQPIMEEPGILSHILLSLLAYGMFTIAAFQALLLLLQDYRLKHKHPSG
HHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LIKNFPPLQTMESLLFGFLWAGWSLLSLSLISGWLFVENLFAQHLVHKTLLACLAWIVFS
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLWGRNRLGWRGHKAIRWTLGGFCLLMLAYFGSKLVREFILHI
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PNSASFQARPSGSMSPLPPSLLPSLAAAIIYAAATVYQSLRLSQAVKPDKRLLCLLGAL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AVIAHAIGLFSQLTHSVGLGLDFFNSASLIAASVIVVTLIATSRIPVENLLVLLFPLGMV
HHHHHHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
TVLLAQFAPSGTVQPIMEEPGILSHILLSLLAYGMFTIAAFQALLLLLQDYRLKHKHPSG
HHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LIKNFPPLQTMESLLFGFLWAGWSLLSLSLISGWLFVENLFAQHLVHKTLLACLAWIVFS
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLWGRNRLGWRGHKAIRWTLGGFCLLMLAYFGSKLVREFILHI
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]