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The map label for this gene is secD [H]

Identifier: 66044478

GI number: 66044478

Start: 1388001

End: 1389869

Strand: Direct

Name: secD [H]

Synonym: Psyr_1230

Alternate gene names: 66044478

Gene position: 1388001-1389869 (Clockwise)

Preceding gene: 66044477

Following gene: 66044479

Centisome position: 22.78

GC content: 58.86

Gene sequence:

>1869_bases
ATGCTGAACAAATACCCTCTGTGGAAATACGTACTGATCCTGGCGGTGCTGGTGGTCGGTTTTATTTATTCCGCACCCAA
TCTCTACCCTGATGATTCTGCCATCCAGATCAGCGGCGCAAGCACTGCGCTGCAAGTCAATCAGGCGGACGTGGATCGTG
CAGCCAAGGCGCTTGCCGATGCCGGCATCTCGGTCAAGGCTTCTTCTCTGGCCGAGAATGGCAAGGGCGGTTTGTTGCGT
CTGAGCAAGCAGGAAGACCAGTTGCCAGCCAAGGATGTCGTGCGCAAGGCGTTGGGTGACGACTATGTCGTTGCACTGAA
CCTGGCGCGTACCACGCCGACCTGGTTGCGTAACCTGGGTGCAAGCCCGATGAAGCTCGGTCTCGACCTGTCCGGCGGTG
TGCACTTCCTGCTGGAAGTCGACATGGACAAGGCGATCGATGCACGTCTGAAAGTCTACGAAGGCGAAGTCAAATCCCTG
TTGCGCAAGGAAAAGGTGCGTTATCGCAGCCTGCCGCAGCTGGGCAATGTGATTCAGCTGGGCTTCACCGACGATGCAGA
GCGCGAGCAGGCTCGTGCACTGGTGCGCAAGAGCTTTACCGATTTCGAAATCACGCCTGCCGAGCTGAACGGTATCCCTG
TACTGCGCATGGCGCTGACGCCGGCCAAGCTGGCCGAGATTCGTGAATACTCGATCAAACAGAACCTGACCACCGTCCGT
AACCGGGTCAACGAGCTGGGTGTTGCCGAGCCGCTGGTTCAGCGTCAGGGCGCCAACCGCATCGTGGTCGAGTTGCCGGG
TGTGCAGGACACGGCCGAAGCCAAGCGTATTCTGGGCAAGACCGCCAACCTCGAATTCCGTCTGGGTGCAGGCCCGGATG
ATTCGAAAGGCACCACCGAGATGTTCGAATTCCGCGAAGGCGGTCGTCCGGCAGCGGCGGTGGAGCGTGGTCTGATCATT
ACCGGTGATCAGGTGACTGACGCCAAGGCCAGCTTCGACGAGCATGGTCGTCCACAGGTGAACATCAACCTCGATGGTCA
TGGTGGCGAACTGATGAGCCGTGCAACCCGCAGCAATGTGGGACGCAGCATGGCGGTGATCTTCATCGAACAGCGTCCGA
CCACCACCTACACCAGGCAGATGGTCGACGGTGTCGAGAAAGACGTGCCGGTGCAGACCTTCAAGGAAGACAAGAAAATC
ATCAGCCTGGCGACCATCCAGTCGCCACTGGGCAGTCAGTTCCGGATTACCGGTCTGAACGGTCAGGGTGAATCTTCCGA
GCTGGCGCTGCTGTTGCGTGCCGGTGGTCTGGCGGCACCGATGTACTTCGCCGAAGAGCGCACCATTGGTCCTAGCCTGG
GTGCCGACAACATCACCAAGGGTATCGACGCTTCCTTGTGGGGCATGCTGTTCGTCTCGATCTTCATCATGGCGATCTAC
CGTTTCTTCGGTCTGATCGCGACTGTCGCACTGGCCCTGAACATGGTCATGCTGCTGGCCTTGATGTCCTTGCTGGGGGC
AACGCTGACCCTGCCGGGTATCGCCGGTATCGTGTTGACCATGGGTATGGCGGTGGACGCCAACGTGCTGATCTTCTCGC
GGATTCGTGAGGAGATCGCCAACGGCATGACGGTCCAGCGTGCTATCAACGAAGGTTTCGATCGTGCCTACACGGCGATC
CTCGACGCCAACCTGACGACGCTGCTGGTCGGCGGCATCCTCTTTGCAATGGGCACCGGCCCGGTCAAAGGGTTTGCGGT
GACCATGTCGCTCGGGATCTTTACCTCGATGTTCACGGCCATCATGGTGACCCGCGCTATGGTCAACCTGATCTACGGCG
GTCGTGACTTCAAGAAGTTGTGGATTTAA

Upstream 100 bases:

>100_bases
GGCCACTCTGCCTAAAGGCACCCTGAAAGCGATCTGAGCAACAACTTTTTACCCATCGACGGGGCGCGCAAGGCGCCCCG
CGTTTTAAGCGGGCGGCGTG

Downstream 100 bases:

>100_bases
GGGGCTGCCATGTTACGTACCATCAACTTCATGGGCGTTCGCAATGTTGCGTTCGCCATCACGATGCTCCTTACCGCACT
GGCGTTGTTCAGCTGGTTCC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 622; Mature: 622

Protein sequence:

>622_residues
MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALADAGISVKASSLAENGKGGLLR
LSKQEDQLPAKDVVRKALGDDYVVALNLARTTPTWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSL
LRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKSFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR
NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEMFEFREGGRPAAAVERGLII
TGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVDGVEKDVPVQTFKEDKKI
ISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIY
RFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAI
LDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI

Sequences:

>Translated_622_residues
MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALADAGISVKASSLAENGKGGLLR
LSKQEDQLPAKDVVRKALGDDYVVALNLARTTPTWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSL
LRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKSFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR
NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEMFEFREGGRPAAAVERGLII
TGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVDGVEKDVPVQTFKEDKKI
ISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIY
RFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAI
LDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI
>Mature_622_residues
MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALADAGISVKASSLAENGKGGLLR
LSKQEDQLPAKDVVRKALGDDYVVALNLARTTPTWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSL
LRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKSFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR
NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTEMFEFREGGRPAAAVERGLII
TGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVDGVEKDVPVQTFKEDKKI
ISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIY
RFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAI
LDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=637, Percent_Identity=47.8806907378336, Blast_Score=559, Evalue=1e-160,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67404; Mature: 67404

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS00132 CARBOXYPEPT_ZN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALAD
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEECHHHHHHHHHHHHH
AGISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPTWLRNLG
CCCCEEHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCCCHHHHHHCC
ASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSLPQLGNVIQL
CCCCEECEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEE
GFTDDAEREQARALVRKSFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR
CCCCCHHHHHHHHHHHHCCCCCEECHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE
HHHHHCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV
HHHHHCCCCCHHHHHCCEEEECCCCCCCHHCHHCCCCCEEEEEECCCCHHHHHHHHHHHC
GRSMAVIFIEQRPTTTYTRQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN
CCEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHEEEHHHHHCCCCCCEEEEECC
GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIY
CCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
RFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
NGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHH
IMVTRAMVNLIYGGRDFKKLWI
HHHHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure
MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVNQADVDRAAKALAD
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEECHHHHHHHHHHHHH
AGISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPTWLRNLG
CCCCEEHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCCCHHHHHHCC
ASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSLPQLGNVIQL
CCCCEECEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEE
GFTDDAEREQARALVRKSFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQNLTTVR
CCCCCHHHHHHHHHHHHCCCCCEECHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
NRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDSKGTTE
HHHHHCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
MFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRATRSNV
HHHHHCCCCCHHHHHCCEEEECCCCCCCHHCHHCCCCCEEEEEECCCCHHHHHHHHHHHC
GRSMAVIFIEQRPTTTYTRQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLN
CCEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHEEEHHHHHCCCCCCEEEEECC
GQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIY
CCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
RFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
NGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTA
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHH
IMVTRAMVNLIYGGRDFKKLWI
HHHHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]