Click here to switch to the map view.

The map label for this gene is 66044438

Identifier: 66044438

GI number: 66044438

Start: 1342667

End: 1343056

Strand: Direct

Name: 66044438

Synonym: Psyr_1187

Alternate gene names: NA

Gene position: 1342667-1343056 (Clockwise)

Preceding gene: 66044437

Following gene: 66044440

Centisome position: 22.03

GC content: 59.23

Gene sequence:

>390_bases
ATGAATACCTCGCAACACGAGTTCTCCCGTTTCATCACTGCGCTGGGTGCCCAGCTTGGCACTTCGCTTACCTGGCAGAA
CGGGGTATGCGCCCTGTATGACAGCCAGGACAACGAAGCCGCCGTCATCGAGTTGCCCGAGCACAGTGAGATGGTCATCT
TTCATTGCCGTGTCGGGCGCTGCCCGGAACGTTCTGCCGATTTGCAGCAGTTGTTGAGCCTGAACTTCGATGTCGCCCGC
TTGCACGGTTGCTGGTTTGCCGTCGATCAGGGCGATGTGCGCCTGTGTGCGCAACGTGAGCTGGTATCGCTCGATGAGCC
AGCCTTTTGCGACGTGACGCGTGGCTTTATTGCTCAGGCTCGCGAAGCCCGCGCATTTCTGCACGCCTGA

Upstream 100 bases:

>100_bases
TGATGAAAGCAACCAGGGCTGAGCCTTTCTTTTGGAACCGACAGCGCCAGGCAGCCACTCACTGCCTGGTCAGCTCAGGC
TTTCTTAAAGGACTATGACA

Downstream 100 bases:

>100_bases
ACAGACGGGGTTGCCCGCCAACGCGCCGCTTCCATGCGGCGCTTTTTACGGTGTTTCAACTATCAGCTTTTGACTTCGAA
GCCCGACAGTTTCAACTCGC

Product: DspFAvrF

Products: NA

Alternate protein names: Avirulence Protein; Type III Chaperone Protein AvrF; DspFAvrF; Type III Chaperone ShcE

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MNTSQHEFSRFITALGAQLGTSLTWQNGVCALYDSQDNEAAVIELPEHSEMVIFHCRVGRCPERSADLQQLLSLNFDVAR
LHGCWFAVDQGDVRLCAQRELVSLDEPAFCDVTRGFIAQAREARAFLHA

Sequences:

>Translated_129_residues
MNTSQHEFSRFITALGAQLGTSLTWQNGVCALYDSQDNEAAVIELPEHSEMVIFHCRVGRCPERSADLQQLLSLNFDVAR
LHGCWFAVDQGDVRLCAQRELVSLDEPAFCDVTRGFIAQAREARAFLHA
>Mature_129_residues
MNTSQHEFSRFITALGAQLGTSLTWQNGVCALYDSQDNEAAVIELPEHSEMVIFHCRVGRCPERSADLQQLLSLNFDVAR
LHGCWFAVDQGDVRLCAQRELVSLDEPAFCDVTRGFIAQAREARAFLHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14440; Mature: 14440

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSQHEFSRFITALGAQLGTSLTWQNGVCALYDSQDNEAAVIELPEHSEMVIFHCRVGR
CCCCHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCC
CPERSADLQQLLSLNFDVARLHGCWFAVDQGDVRLCAQRELVSLDEPAFCDVTRGFIAQA
CCCCHHHHHHHHHCCCCEEEECCEEEEECCCCEEEECCHHHCCCCCCCHHHHHHHHHHHH
REARAFLHA
HHHHHHHCC
>Mature Secondary Structure
MNTSQHEFSRFITALGAQLGTSLTWQNGVCALYDSQDNEAAVIELPEHSEMVIFHCRVGR
CCCCHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCC
CPERSADLQQLLSLNFDVARLHGCWFAVDQGDVRLCAQRELVSLDEPAFCDVTRGFIAQA
CCCCHHHHHHHHHCCCCEEEECCEEEEECCCCEEEECCHHHCCCCCCCHHHHHHHHHHHH
REARAFLHA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA