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The map label for this gene is yciR [C]

Identifier: 66044410

GI number: 66044410

Start: 1311737

End: 1313983

Strand: Reverse

Name: yciR [C]

Synonym: Psyr_1159

Alternate gene names: 66044410

Gene position: 1313983-1311737 (Counterclockwise)

Preceding gene: 66044412

Following gene: 66044408

Centisome position: 21.56

GC content: 57.32

Gene sequence:

>2247_bases
ATGAACCCACAGGGCTATGAGCACGACCACGTCATACCGACGAATGTTGAAGATGTTGCCAAGGTATTGCAGGCCGCTGC
TCACTCCGCCTCGTGCACCGCCGCTTTGCTGATGGTATCCAGCGCTACAGGCTGGGAACAGTTGGTCAGCTGCGGCCAAA
GCCTGCTCAAAGCGGATGAGGCATGGTTGAGGATGGTCTCGTCGTATGGCGACGTGGTGCTGGTCGGTCAGGACAGTCCG
GCGAATGCGATCCAGACCAACAGCCCGGGGACTACCCTGATCTACGTTGCTATCCGTGGCTTCAGGCATGAGTTGCTGGG
CGCGATGCTGTTGAGCAACAGCGATGGCGCAATGGTGCTGAGCGCTGCGCAACGCTATGCGCTGCAGGCCCAGGCGGTTC
ATATTCGTACCTACCTGCAACCGGGACGTGATCCCGAGGCCAACAATCCGCTGGTCACCTCGTTCGAACGCCTGCGCTTG
CTTGAATCGGTGGTCATCAACGCCAATGACGCGATTCTTATCACCGAAGCGGAACCCATCGATCTGCCCGGCCCGCGTAT
CGTCTATTGCAACCCTGCGTTTCTGGCAATTACCGGCTTCACGGAAGAGGAAGTCATAGGCCGCACGCCCCGGATTCTGC
AGTGTGAGGACACCAGTCGGGCAACGCTGGACATTATTCGCGAGGCTCTCAGTCACTGGCGACCGGTTGAAGTCGAATTG
CTCAACACCCGCAAGGATGGCAGCCAGTTCTGGGTCGAGTTGAGCATTGTGCCGGTGGCCAACGAAAAAGGCTGGTTCAC
CCATTGGGTATCCGTGCAGCGCGATATCACCGAGCGCAAGGAGTCTCAGCAACTGGCTCAGCGAGCTCGTCTGGAGTGGG
AGGAAAAGCTTGCGTTACAGAGCCGGCTGGAGGAACGCGAGCGCATGTCCGAAGAGCTGACCTATATCGCTTTTCACGAT
GAGCTGACCTCACTGTTCAACCGCGCTTACCTGATGAACGAATTGACCACGGCATTTGAAACCCGTAAGTCTCGTTACGA
ACGGGCAACGGTACTCTTTCTGGACCTGGACGGTTTCAAGGTGGTCAACGACAGCATGGGGCACCTGGCCGGTGACCAGT
TGCTCAAGGGGGTCGCGAACCGATTGCAGACCTGCGTTCGCTCGAATGATGTGTTGGCGCGAATCGGCGGCGACGAATTT
GCGATCCTGCTGATGGGCAAGGATCAGCCGGAGACTGCCGTAAAAATGGCTGAACGCATCGTGAGCCAGTTGAACACGGC
AATCCAGATCGAAGGCCAGGACATTTTCATCTCCTGCAGCATCGGCATCGTCAGCGCAGGCGAAAGTCATACCAAGCCCG
AAGAGTTGCTGCGTGACGCCGATGTGGCCATGTACTCCGCGAAAAAACAGGGCCGAGGACGCTGGAGCATCTTCAACACC
TCAATGCGCGAGGCGGCGATCGACACGCTGATGATTCAGAACGCGTTGCGCCAGGCACTGGAAGACAAGGATTTCCTGGT
CTTTTATCAGCCGATCTACAGCGGCAACTGTGAACACCTGGTCGGGGTCGAAGCCCTGGTCAGATGGAACCATGCCACCA
TGGGCATCATTTCTCCCGATGCGTTCATCCCGATTGCCGAAGACCTGGGGATTATTCATGAGCTGGGTGCCTGGGTAATG
CACAAAGCCTGCAGCGAAGTGCAGGCCTGGCGCAAGGAGTTCTCTCATCTGGACCTCAGGCTCAATGTCAACGTGTCCGG
AAAAGAGTTGAGCCATCCCGGATTCGTCGATCGGGTAACACGGATCATTGCCTCCACCGGCCTGCCTGCTACACAACTGC
AGATCGAGGTCACCGAGTCGGTGTTTCTCTATCAGCCTGACGCGATCGCGGAGATTCTCCGGCAGATCAGGCAGCTTGGC
GTGAGAGTGGCGCTGGATGACTTCGGCACGGGTTACAGCTCGCTCGGCTACATCGACCGTTACCCGATCGATGCCGTGAA
GATCGATCGGTCCTTCGTGTCCCGAATGATGACGTATGAGCGCAGCGAAGCCATTGTCAGCAGCATCCTGTCGCTGGGAC
GAGCGCTGAACCTGGATATCACGGCGGAAGGTGTGGAGACAGCAGAACAATACAACCTGCTGCGCAAAATGGGCTGCCCT
TACTTTCAGGGTTATCTGCTGAACAGACCGATGCGCTCAGAGGCATTGCTGCATATCATCAAATCCGCAGCCGAATGCAC
TGCCTGA

Upstream 100 bases:

>100_bases
CTCCGCGCAGCTGGAAGAGGTCCACGGAACGGGTCCACGGCTTATGCGCTGCCGAACATGATCCGGGCCACACATGCAAG
CCATTCAGGAATAGCGATCG

Downstream 100 bases:

>100_bases
TTTACGCCGACGTTGATGGGCCGGACTGATTCCCGGCCATTACGCAGCACTTCACGTCAACCAGTGCCACAACAGCAATG
TCCCGACCAGCCCGACCACC

Product: PAS:GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 748; Mature: 748

Protein sequence:

>748_residues
MNPQGYEHDHVIPTNVEDVAKVLQAAAHSASCTAALLMVSSATGWEQLVSCGQSLLKADEAWLRMVSSYGDVVLVGQDSP
ANAIQTNSPGTTLIYVAIRGFRHELLGAMLLSNSDGAMVLSAAQRYALQAQAVHIRTYLQPGRDPEANNPLVTSFERLRL
LESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDIIREALSHWRPVEVEL
LNTRKDGSQFWVELSIVPVANEKGWFTHWVSVQRDITERKESQQLAQRARLEWEEKLALQSRLEERERMSEELTYIAFHD
ELTSLFNRAYLMNELTTAFETRKSRYERATVLFLDLDGFKVVNDSMGHLAGDQLLKGVANRLQTCVRSNDVLARIGGDEF
AILLMGKDQPETAVKMAERIVSQLNTAIQIEGQDIFISCSIGIVSAGESHTKPEELLRDADVAMYSAKKQGRGRWSIFNT
SMREAAIDTLMIQNALRQALEDKDFLVFYQPIYSGNCEHLVGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVM
HKACSEVQAWRKEFSHLDLRLNVNVSGKELSHPGFVDRVTRIIASTGLPATQLQIEVTESVFLYQPDAIAEILRQIRQLG
VRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSEAIVSSILSLGRALNLDITAEGVETAEQYNLLRKMGCP
YFQGYLLNRPMRSEALLHIIKSAAECTA

Sequences:

>Translated_748_residues
MNPQGYEHDHVIPTNVEDVAKVLQAAAHSASCTAALLMVSSATGWEQLVSCGQSLLKADEAWLRMVSSYGDVVLVGQDSP
ANAIQTNSPGTTLIYVAIRGFRHELLGAMLLSNSDGAMVLSAAQRYALQAQAVHIRTYLQPGRDPEANNPLVTSFERLRL
LESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDIIREALSHWRPVEVEL
LNTRKDGSQFWVELSIVPVANEKGWFTHWVSVQRDITERKESQQLAQRARLEWEEKLALQSRLEERERMSEELTYIAFHD
ELTSLFNRAYLMNELTTAFETRKSRYERATVLFLDLDGFKVVNDSMGHLAGDQLLKGVANRLQTCVRSNDVLARIGGDEF
AILLMGKDQPETAVKMAERIVSQLNTAIQIEGQDIFISCSIGIVSAGESHTKPEELLRDADVAMYSAKKQGRGRWSIFNT
SMREAAIDTLMIQNALRQALEDKDFLVFYQPIYSGNCEHLVGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVM
HKACSEVQAWRKEFSHLDLRLNVNVSGKELSHPGFVDRVTRIIASTGLPATQLQIEVTESVFLYQPDAIAEILRQIRQLG
VRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSEAIVSSILSLGRALNLDITAEGVETAEQYNLLRKMGCP
YFQGYLLNRPMRSEALLHIIKSAAECTA
>Mature_748_residues
MNPQGYEHDHVIPTNVEDVAKVLQAAAHSASCTAALLMVSSATGWEQLVSCGQSLLKADEAWLRMVSSYGDVVLVGQDSP
ANAIQTNSPGTTLIYVAIRGFRHELLGAMLLSNSDGAMVLSAAQRYALQAQAVHIRTYLQPGRDPEANNPLVTSFERLRL
LESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDIIREALSHWRPVEVEL
LNTRKDGSQFWVELSIVPVANEKGWFTHWVSVQRDITERKESQQLAQRARLEWEEKLALQSRLEERERMSEELTYIAFHD
ELTSLFNRAYLMNELTTAFETRKSRYERATVLFLDLDGFKVVNDSMGHLAGDQLLKGVANRLQTCVRSNDVLARIGGDEF
AILLMGKDQPETAVKMAERIVSQLNTAIQIEGQDIFISCSIGIVSAGESHTKPEELLRDADVAMYSAKKQGRGRWSIFNT
SMREAAIDTLMIQNALRQALEDKDFLVFYQPIYSGNCEHLVGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVM
HKACSEVQAWRKEFSHLDLRLNVNVSGKELSHPGFVDRVTRIIASTGLPATQLQIEVTESVFLYQPDAIAEILRQIRQLG
VRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSEAIVSSILSLGRALNLDITAEGVETAEQYNLLRKMGCP
YFQGYLLNRPMRSEALLHIIKSAAECTA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=435, Percent_Identity=35.8620689655172, Blast_Score=279, Evalue=4e-76,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=31.712962962963, Blast_Score=237, Evalue=2e-63,
Organism=Escherichia coli, GI226510982, Length=434, Percent_Identity=30.184331797235, Blast_Score=182, Evalue=5e-47,
Organism=Escherichia coli, GI1787055, Length=245, Percent_Identity=37.1428571428571, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=33.8775510204082, Blast_Score=150, Evalue=4e-37,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=36, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=35.655737704918, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=31.7073170731707, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=31.8367346938775, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI1788381, Length=297, Percent_Identity=31.986531986532, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081980, Length=233, Percent_Identity=33.4763948497854, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI87082096, Length=390, Percent_Identity=25.3846153846154, Blast_Score=123, Evalue=5e-29,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=32.1138211382114, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=41.566265060241, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=32.183908045977, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=37.8698224852071, Blast_Score=97, Evalue=5e-21,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=35.5029585798817, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI87081977, Length=216, Percent_Identity=31.0185185185185, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=33.1460674157303, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788956, Length=211, Percent_Identity=30.8056872037915, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1789650, Length=439, Percent_Identity=21.8678815489749, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=30.6748466257669, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1787410, Length=222, Percent_Identity=26.1261261261261, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI1787816, Length=129, Percent_Identity=37.2093023255814, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787056, Length=164, Percent_Identity=33.5365853658537, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87081974, Length=168, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=26.9461077844311, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 83533; Mature: 83533

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPQGYEHDHVIPTNVEDVAKVLQAAAHSASCTAALLMVSSATGWEQLVSCGQSLLKADE
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AWLRMVSSYGDVVLVGQDSPANAIQTNSPGTTLIYVAIRGFRHELLGAMLLSNSDGAMVL
HHHHHHHCCCCEEEEECCCCCCCEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEH
SAAQRYALQAQAVHIRTYLQPGRDPEANNPLVTSFERLRLLESVVINANDAILITEAEPI
HHHHHHHHHHHHEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
DLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDIIREALSHWRPVEVEL
CCCCCEEEEECCCEEEEECCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEE
LNTRKDGSQFWVELSIVPVANEKGWFTHWVSVQRDITERKESQQLAQRARLEWEEKLALQ
EECCCCCCEEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
SRLEERERMSEELTYIAFHDELTSLFNRAYLMNELTTAFETRKSRYERATVLFLDLDGFK
HHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCE
VVNDSMGHLAGDQLLKGVANRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAVKMAERI
EECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHH
VSQLNTAIQIEGQDIFISCSIGIVSAGESHTKPEELLRDADVAMYSAKKQGRGRWSIFNT
HHHCCCEEEEECCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECC
SMREAAIDTLMIQNALRQALEDKDFLVFYQPIYSGNCEHLVGVEALVRWNHATMGIISPD
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHEECCCEEEEECCC
AFIPIAEDLGIIHELGAWVMHKACSEVQAWRKEFSHLDLRLNVNVSGKELSHPGFVDRVT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCHHHHHH
RIIASTGLPATQLQIEVTESVFLYQPDAIAEILRQIRQLGVRVALDDFGTGYSSLGYIDR
HHHHHCCCCCEEEEEEEECEEEEECCHHHHHHHHHHHHCCCEEEECCCCCCCHHCCCCCC
YPIDAVKIDRSFVSRMMTYERSEAIVSSILSLGRALNLDITAEGVETAEQYNLLRKMGCP
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEECCCHHHHHHHHHHHHHCCC
YFQGYLLNRPMRSEALLHIIKSAAECTA
HHHHHHHCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNPQGYEHDHVIPTNVEDVAKVLQAAAHSASCTAALLMVSSATGWEQLVSCGQSLLKADE
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AWLRMVSSYGDVVLVGQDSPANAIQTNSPGTTLIYVAIRGFRHELLGAMLLSNSDGAMVL
HHHHHHHCCCCEEEEECCCCCCCEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEH
SAAQRYALQAQAVHIRTYLQPGRDPEANNPLVTSFERLRLLESVVINANDAILITEAEPI
HHHHHHHHHHHHEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
DLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDIIREALSHWRPVEVEL
CCCCCEEEEECCCEEEEECCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEE
LNTRKDGSQFWVELSIVPVANEKGWFTHWVSVQRDITERKESQQLAQRARLEWEEKLALQ
EECCCCCCEEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
SRLEERERMSEELTYIAFHDELTSLFNRAYLMNELTTAFETRKSRYERATVLFLDLDGFK
HHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCE
VVNDSMGHLAGDQLLKGVANRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAVKMAERI
EECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHH
VSQLNTAIQIEGQDIFISCSIGIVSAGESHTKPEELLRDADVAMYSAKKQGRGRWSIFNT
HHHCCCEEEEECCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECC
SMREAAIDTLMIQNALRQALEDKDFLVFYQPIYSGNCEHLVGVEALVRWNHATMGIISPD
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHEECCCEEEEECCC
AFIPIAEDLGIIHELGAWVMHKACSEVQAWRKEFSHLDLRLNVNVSGKELSHPGFVDRVT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCHHHHHH
RIIASTGLPATQLQIEVTESVFLYQPDAIAEILRQIRQLGVRVALDDFGTGYSSLGYIDR
HHHHHCCCCCEEEEEEEECEEEEECCHHHHHHHHHHHHCCCEEEECCCCCCCHHCCCCCC
YPIDAVKIDRSFVSRMMTYERSEAIVSSILSLGRALNLDITAEGVETAEQYNLLRKMGCP
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEECCCHHHHHHHHHHHHHCCC
YFQGYLLNRPMRSEALLHIIKSAAECTA
HHHHHHHCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]