Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 66044408

GI number: 66044408

Start: 1308739

End: 1309995

Strand: Reverse

Name: ydaM [H]

Synonym: Psyr_1157

Alternate gene names: 66044408

Gene position: 1309995-1308739 (Counterclockwise)

Preceding gene: 66044410

Following gene: 66044406

Centisome position: 21.5

GC content: 57.76

Gene sequence:

>1257_bases
ATGACCTCATCCAGCCAGCGTCTTGCCTTGCTTGAAGCAGTTGTTGAACAGTCATTCAATGCCGTATTGATCACCGACGC
CAATCTGGCCAATGGCGGCCCCTTCATTGTGTACGTCAATCCGGCATTCTGCGCCATGACCGGCTACACGGCCGAGGCAT
TGATCGGAGCCTCGCCACGGATCCTGCAAGGCCCGGACACCGATCCCCAAGTGATCGAGCGGATGCGCGAATGCCTGAGC
GAAAGTCTTTTTTTCGAAGGGTCGACGGTCAATTACCGCGCGGACGGAAGTCCTTACATCGTCGAGTGGAAAATTTCTCC
CGTGCGCGACGATGCCGGTACGGTATGCAACTTTGTCTCTGTGCAGCAGAACATCAGCCCGCGCATCCGCGCCGAGCGTG
AGCAACACCTGCTGGCGCAGGCGCTGAACGCTGCGCTTGATCCGATTATCATCACCGACTGCAATTCCACCATCGTGTTT
GCCAATGAGGCCTTTCAGCAGATCACTGGCTACAGCAGCAGCGAAATCCTCGGCGAAAACCCGCGAATGCTGAGCTCTGG
AAAACACGATGAGGCGTTCTATGCGCAATTCAAGGAAGCGCTGAAGAGTGGCGCCCCGCTTCGCACGACCTTCATCAACA
AGCGCAAGGATGGCTCGCTGTTCTATGCGGAACACAGCATTTCTCCACTGTGTAATCTGGAGGGCGCAATCACCCATTAC
GTCAGCATCAGCCAGGATGTGACCACACGCCTGGGCCGTGAACAAAAGTTGCTGGAGATTGCGCACAGCGATCCGCTGAC
CGGGCTGGATAATCGTCGCTCCGCCGAGCATACGCTTGAGCGGCAAATACCTGCGGTGAGCATGTCGGGCAAGCCGTTCA
GCCTGATCATCTGCGATATCGATCATTTCAAGGCGGTCAATGACCGGTACGGCCATCCTGCCGGCGACAGCGTAATCACC
AGCGTTGCGGCCATCCTCAAACAGCGTATCCGCCTCTTGGATGTCGCCGCTCGATGGGGAGGAGAAGAGTTTCTGATCCT
GGTGCCCGACAGCTCGTTGAAACAGGCTGCCGAACTCGCGGAACGCATTCGCAACAGCGTTGAAAGCCTGGTGATTCCGG
AAACCGGGTCGGTGACCATTTCTCTGGGCGTTGCAGAGCTCAGCGCCGGGGAAACGGCCGCCAGCCTCATTCAGCGTGCA
GACAAGGCGCTTTATCAGGCCAAGCGCTTGGGCCGCAACCGGGTGGAATGCGCTTAG

Upstream 100 bases:

>100_bases
TGCGGTCCAATCCACGGCATCCATCGTCCAACCGGCATTGCGTCACACATTATCTGATCAGAGCCGCGATCAATTAACGG
ATCACTCGACAGGAAATCAG

Downstream 100 bases:

>100_bases
ACCAAGACTTGGTTTTACTCGTTGCCCGCCTCGTTTGCCTGCGCATTGAACCCGGGCCTGTCATTGCAACAGGCCCGGAA
ATCGTGTCAGAGCTTTGGCA

Product: PAS:GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MTSSSQRLALLEAVVEQSFNAVLITDANLANGGPFIVYVNPAFCAMTGYTAEALIGASPRILQGPDTDPQVIERMRECLS
ESLFFEGSTVNYRADGSPYIVEWKISPVRDDAGTVCNFVSVQQNISPRIRAEREQHLLAQALNAALDPIIITDCNSTIVF
ANEAFQQITGYSSSEILGENPRMLSSGKHDEAFYAQFKEALKSGAPLRTTFINKRKDGSLFYAEHSISPLCNLEGAITHY
VSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPAGDSVIT
SVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRNSVESLVIPETGSVTISLGVAELSAGETAASLIQRA
DKALYQAKRLGRNRVECA

Sequences:

>Translated_418_residues
MTSSSQRLALLEAVVEQSFNAVLITDANLANGGPFIVYVNPAFCAMTGYTAEALIGASPRILQGPDTDPQVIERMRECLS
ESLFFEGSTVNYRADGSPYIVEWKISPVRDDAGTVCNFVSVQQNISPRIRAEREQHLLAQALNAALDPIIITDCNSTIVF
ANEAFQQITGYSSSEILGENPRMLSSGKHDEAFYAQFKEALKSGAPLRTTFINKRKDGSLFYAEHSISPLCNLEGAITHY
VSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPAGDSVIT
SVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRNSVESLVIPETGSVTISLGVAELSAGETAASLIQRA
DKALYQAKRLGRNRVECA
>Mature_417_residues
TSSSQRLALLEAVVEQSFNAVLITDANLANGGPFIVYVNPAFCAMTGYTAEALIGASPRILQGPDTDPQVIERMRECLSE
SLFFEGSTVNYRADGSPYIVEWKISPVRDDAGTVCNFVSVQQNISPRIRAEREQHLLAQALNAALDPIIITDCNSTIVFA
NEAFQQITGYSSSEILGENPRMLSSGKHDEAFYAQFKEALKSGAPLRTTFINKRKDGSLFYAEHSISPLCNLEGAITHYV
SISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPAGDSVITS
VAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRNSVESLVIPETGSVTISLGVAELSAGETAASLIQRAD
KALYQAKRLGRNRVECA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=209, Percent_Identity=38.2775119617225, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787262, Length=215, Percent_Identity=38.6046511627907, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=38.6075949367089, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=43.9759036144578, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788381, Length=291, Percent_Identity=29.8969072164948, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786584, Length=180, Percent_Identity=34.4444444444444, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=35.2564102564103, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=38.2352941176471, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081974, Length=152, Percent_Identity=34.8684210526316, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787802, Length=132, Percent_Identity=34.8484848484849, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787541, Length=281, Percent_Identity=25.6227758007117, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=34.1463414634146, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081977, Length=194, Percent_Identity=28.3505154639175, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1787056, Length=158, Percent_Identity=30.379746835443, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 45627; Mature: 45496

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSSQRLALLEAVVEQSFNAVLITDANLANGGPFIVYVNPAFCAMTGYTAEALIGASPR
CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCHHHEECCCCHHHHHCCCCC
ILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVEWKISPVRDDAGTVCNFVS
EECCCCCCHHHHHHHHHHHHHHHEECCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHH
VQQNISPRIRAEREQHLLAQALNAALDPIIITDCNSTIVFANEAFQQITGYSSSEILGEN
HHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCC
PRMLSSGKHDEAFYAQFKEALKSGAPLRTTFINKRKDGSLFYAEHSISPLCNLEGAITHY
CCCCCCCCCCHHHHHHHHHHHHCCCCEEEHCCCCCCCCCEEEECCCCCCCCCCCCHHHHE
VSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDI
EECCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCEEEEEECC
DHFKAVNDRYGHPAGDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
ERIRNSVESLVIPETGSVTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVECA
HHHHHHHHHEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TSSSQRLALLEAVVEQSFNAVLITDANLANGGPFIVYVNPAFCAMTGYTAEALIGASPR
CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCHHHEECCCCHHHHHCCCCC
ILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVEWKISPVRDDAGTVCNFVS
EECCCCCCHHHHHHHHHHHHHHHEECCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHH
VQQNISPRIRAEREQHLLAQALNAALDPIIITDCNSTIVFANEAFQQITGYSSSEILGEN
HHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCC
PRMLSSGKHDEAFYAQFKEALKSGAPLRTTFINKRKDGSLFYAEHSISPLCNLEGAITHY
CCCCCCCCCCHHHHHHHHHHHHCCCCEEEHCCCCCCCCCEEEECCCCCCCCCCCCHHHHE
VSISQDVTTRLGREQKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDI
EECCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCEEEEEECC
DHFKAVNDRYGHPAGDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
ERIRNSVESLVIPETGSVTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVECA
HHHHHHHHHEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]