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The map label for this gene is lptF [H]

Identifier: 66044343

GI number: 66044343

Start: 1234466

End: 1235593

Strand: Direct

Name: lptF [H]

Synonym: Psyr_1092

Alternate gene names: 66044343

Gene position: 1234466-1235593 (Clockwise)

Preceding gene: 66044337

Following gene: 66044344

Centisome position: 20.26

GC content: 60.82

Gene sequence:

>1128_bases
TTGATTGTCTTCCGTTATCTGTCCCGAGAAGTGCTGCTTACCTTGAGTGCGGTCAGCGCCGTACTGCTGGTGTTCATCAT
GAGCGGGCGCTTCATCAAGTACCTGGCGCAGGCCGCGTCCGGTGCGCTCGATCCTGGCGTACTGTTCCTGATCATGGGCT
TCCGCCTGCCGGGCTTTCTGCAGGTTATCCTGCCGCTGGGCCTGTTCCTCGGCATCCTCATGGCGTACGGACGGCTGTAC
CTGGAAAGCGAGATGACCGTGCTGGCCGCAACCGGCATGAGTCAGCAGCGCCTGCTGGCTATCACCATGGGGCCGGCCAC
GCTGGTGGGTCTGCTGGTCGCCTGGCTGAGCTTCAGCCTGGCTCCACAGGGTGCCACACAATTTTCGCTGCTGATCAATC
AGCAGGACGCCATGACCGAGTTCGACACGCTGGTGCCGGGCCGTTTTCAGGCGCTGCGTGACGGTACGCGTATCACCTAC
ACCAAGGAGCTGTCGGAAGACCGCTCGCAACTGGCCGGCGTGTTCATCTCGGAAAAGCGCATGTCCAGCGACAAGAGCAA
GGACAACGGCATCACCGTGCTGGTCGCGGAGAAGGGCCACCAGGAGGTACGGCCCAATGGCAGTCGCTTTCTGATCCTCG
AGAACGGCTATCGCTATGACGGCAATCCGGGGGCTGCCGACTACCGCGTGATCAAGTACGACACCTACGGGGCGATGCTG
CCCAAGCCGGAAATCAGTGAGGAAATCACCGACCGTGAAGCCATTCCGACCAGCGAGCTGATCGGCAACCCGGCACCGCG
TTCCGTGGCCGAGCTGCAGTGGCGTATTTCGCTGCCGCTGTCGGTGTTCATCGTGACCTTGATGGCCATCCCGCTGTCAC
GGGTCAATCCGCGTCAGGGCCGTTACCTGAAACTGCTGCCGGCGATCCTTCTGTATATGTCTTACCTGGCCATTCTGATT
TCTGTGCGCAGTTCGCTGGAGAAAGGCAAGCTGCCGCTCAGCCTGGGGATGTGGTGGGTGCATGCCATCTACCTGTCCAT
CGGCCTGCTGTTGTTCTATTGGGAGCCTCTGCGTCTGAAGATGGCGAGTCGTCGCAGCGTCACGGAGGTGACTCGTGGTC
AAGCTTGA

Upstream 100 bases:

>100_bases
TTGAGGCCCACGCCTTTTGTCGGCGTGAAGCTCTGGTTGCCGTGGCTCACAAATTTTCCCTGTTTGGCTGCCTGAGCCTG
ACAACTCTGGAGTGTCTGGT

Downstream 100 bases:

>100_bases
TCGATACATTGGCAAAAGCGTCCTGCTGGCGATTCTCGCGGTTCTGGGCATCATTCTGGGGCTGGTCTCGCTGTTCGCGT
TCATCGACGAGATGGGCGAT

Product: permease YjgP/YjgQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MIVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVILPLGLFLGILMAYGRLY
LESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLAPQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITY
TKELSEDRSQLAGVFISEKRMSSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAML
PKPEISEEITDREAIPTSELIGNPAPRSVAELQWRISLPLSVFIVTLMAIPLSRVNPRQGRYLKLLPAILLYMSYLAILI
SVRSSLEKGKLPLSLGMWWVHAIYLSIGLLLFYWEPLRLKMASRRSVTEVTRGQA

Sequences:

>Translated_375_residues
MIVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVILPLGLFLGILMAYGRLY
LESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLAPQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITY
TKELSEDRSQLAGVFISEKRMSSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAML
PKPEISEEITDREAIPTSELIGNPAPRSVAELQWRISLPLSVFIVTLMAIPLSRVNPRQGRYLKLLPAILLYMSYLAILI
SVRSSLEKGKLPLSLGMWWVHAIYLSIGLLLFYWEPLRLKMASRRSVTEVTRGQA
>Mature_375_residues
MIVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVILPLGLFLGILMAYGRLY
LESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLAPQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITY
TKELSEDRSQLAGVFISEKRMSSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAML
PKPEISEEITDREAIPTSELIGNPAPRSVAELQWRISLPLSVFIVTLMAIPLSRVNPRQGRYLKLLPAILLYMSYLAILI
SVRSSLEKGKLPLSLGMWWVHAIYLSIGLLLFYWEPLRLKMASRRSVTEVTRGQA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=365, Percent_Identity=33.1506849315069, Blast_Score=170, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 41719; Mature: 41719

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFL
CEEEHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHH
QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL
HHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHHHC
APQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKR
CCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHH
MSSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAML
HCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCEEECCCCCCCCEEEEEEECCCCCC
PKPEISEEITDREAIPTSELIGNPAPRSVAELQWRISLPLSVFIVTLMAIPLSRVNPRQG
CCCCHHHHHHCCCCCCCHHHCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCC
RYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLSIGLLLFYWEPLRLK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
MASRRSVTEVTRGQA
HHHCCHHHHHHCCCC
>Mature Secondary Structure
MIVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFL
CEEEHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHH
QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL
HHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHHHC
APQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKR
CCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHH
MSSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAML
HCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCEEECCCCCCCCEEEEEEECCCCCC
PKPEISEEITDREAIPTSELIGNPAPRSVAELQWRISLPLSVFIVTLMAIPLSRVNPRQG
CCCCHHHHHHCCCCCCCHHHCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCC
RYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLSIGLLLFYWEPLRLK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
MASRRSVTEVTRGQA
HHHCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]