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The map label for this gene is rhaS [H]

Identifier: 66044294

GI number: 66044294

Start: 1176188

End: 1177063

Strand: Reverse

Name: rhaS [H]

Synonym: Psyr_1041

Alternate gene names: 66044294

Gene position: 1177063-1176188 (Counterclockwise)

Preceding gene: 66044296

Following gene: 66044293

Centisome position: 19.32

GC content: 63.58

Gene sequence:

>876_bases
ATGTCCGCCATTGAATCCATCCAGGTCTTTCAGGCCCTGAACAGTTCACCCAATGCCAATCTGGAGCAGAGCGCGCCGCT
GGGCGACGGGCTGGTGGCGGCGTTGTGGAACAATCGGCACGACTCGCAGGAATATCACGCACCGACCCACCATACCCTGT
CGTGCTATATCGAGGACGGTACCGGGACCTTTCGCCGCGGCAGACCCGACCAGAAAGGCGCGCCGGGCAAGCTGTGCGTA
TTACCCGCCGGTCATGAGTCCGCCTGGGTAGTGAACGGCGAGATCCGCCTGGCGCATCTGTATTTCAGCCCGGAACAGTT
TGCACTGGGCTGCGTGACCCTGCTGGATCGCGAGCCGCGCGAGATGCAGCTGCGGGAAAACACCTTTCTGGAAGACCCCG
CACAAGCCGCACGCTTCCGGCAGCTGATTCGCCTGAACTGGGCAGAACCCGGCGAGCGCCTGCTGACCAGCAGCCTGGCG
CACGAGATGGTCAGCCATGCGCTGCTCAATCAGGCAGGCCTGCGCGAAGGGCTGCGCTTGAAAGGCGGCCTGGCGCCGCA
TCTGCGCCGGTATCTGGTGGACTTCATCGAAATGCATCTCGCCGACCCGCTGAGCCTTGGCCAACTGGCCGGCCTGTGTG
CGCTGTCGGAATACCACTTCGCGCGCATGTTTCGCGAAAGCTTCGGTTTGCCGCCGCACCAGTACCTGCTGGCGCGACGC
ATCGAGCAGGCGCGCCAATTGCTGCGCAGTACCGGCAAGCCACTGGGCGAAATCGCGCTGGCTTGCGGGTTCGCCAGCGC
CAGCCATTTCAGCAACCGTTTTCGTCAGGCCACGGGGGCGACACCGGGTGAGTACAGAACGGCTTTAGGCCAATAG

Upstream 100 bases:

>100_bases
TGCCGGCCTGCCATCGCTTGCACAATCTTGCGCATTTGATTCAAGCGCTACTGGCAGCGGCGTCGCCAGCGAGTAGGATA
CAAATCCTAGAGGAATCGTC

Downstream 100 bases:

>100_bases
CTGACTCACCGCTGCCCATGCTCATCAACCGCCACCCAGCCGCAGTTGCTCTCGCCACGCATTACGACACTGGTTCTGGC
TTTTGCCGTGCGTTTTTTCG

Product: helix-turn-helix, AraC type:Arac protein, arabinose-binding/dimerisation

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MSAIESIQVFQALNSSPNANLEQSAPLGDGLVAALWNNRHDSQEYHAPTHHTLSCYIEDGTGTFRRGRPDQKGAPGKLCV
LPAGHESAWVVNGEIRLAHLYFSPEQFALGCVTLLDREPREMQLRENTFLEDPAQAARFRQLIRLNWAEPGERLLTSSLA
HEMVSHALLNQAGLREGLRLKGGLAPHLRRYLVDFIEMHLADPLSLGQLAGLCALSEYHFARMFRESFGLPPHQYLLARR
IEQARQLLRSTGKPLGEIALACGFASASHFSNRFRQATGATPGEYRTALGQ

Sequences:

>Translated_291_residues
MSAIESIQVFQALNSSPNANLEQSAPLGDGLVAALWNNRHDSQEYHAPTHHTLSCYIEDGTGTFRRGRPDQKGAPGKLCV
LPAGHESAWVVNGEIRLAHLYFSPEQFALGCVTLLDREPREMQLRENTFLEDPAQAARFRQLIRLNWAEPGERLLTSSLA
HEMVSHALLNQAGLREGLRLKGGLAPHLRRYLVDFIEMHLADPLSLGQLAGLCALSEYHFARMFRESFGLPPHQYLLARR
IEQARQLLRSTGKPLGEIALACGFASASHFSNRFRQATGATPGEYRTALGQ
>Mature_290_residues
SAIESIQVFQALNSSPNANLEQSAPLGDGLVAALWNNRHDSQEYHAPTHHTLSCYIEDGTGTFRRGRPDQKGAPGKLCVL
PAGHESAWVVNGEIRLAHLYFSPEQFALGCVTLLDREPREMQLRENTFLEDPAQAARFRQLIRLNWAEPGERLLTSSLAH
EMVSHALLNQAGLREGLRLKGGLAPHLRRYLVDFIEMHLADPLSLGQLAGLCALSEYHFARMFRESFGLPPHQYLLARRI
EQARQLLRSTGKPLGEIALACGFASASHFSNRFRQATGATPGEYRTALGQ

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=97, Percent_Identity=36.0824742268041, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790339, Length=257, Percent_Identity=26.4591439688716, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32314; Mature: 32183

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIESIQVFQALNSSPNANLEQSAPLGDGLVAALWNNRHDSQEYHAPTHHTLSCYIEDG
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHCCCCCCEEEEEEECC
TGTFRRGRPDQKGAPGKLCVLPAGHESAWVVNGEIRLAHLYFSPEQFALGCVTLLDREPR
CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCEEEEEEEECCHHHHHHHHHHHCCCCH
EMQLRENTFLEDPAQAARFRQLIRLNWAEPGERLLTSSLAHEMVSHALLNQAGLREGLRL
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KGGLAPHLRRYLVDFIEMHLADPLSLGQLAGLCALSEYHFARMFRESFGLPPHQYLLARR
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
IEQARQLLRSTGKPLGEIALACGFASASHFSNRFRQATGATPGEYRTALGQ
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure 
SAIESIQVFQALNSSPNANLEQSAPLGDGLVAALWNNRHDSQEYHAPTHHTLSCYIEDG
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHCCCCCCEEEEEEECC
TGTFRRGRPDQKGAPGKLCVLPAGHESAWVVNGEIRLAHLYFSPEQFALGCVTLLDREPR
CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCEEEEEEEECCHHHHHHHHHHHCCCCH
EMQLRENTFLEDPAQAARFRQLIRLNWAEPGERLLTSSLAHEMVSHALLNQAGLREGLRL
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KGGLAPHLRRYLVDFIEMHLADPLSLGQLAGLCALSEYHFARMFRESFGLPPHQYLLARR
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
IEQARQLLRSTGKPLGEIALACGFASASHFSNRFRQATGATPGEYRTALGQ
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA