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The map label for this gene is fecI [H]

Identifier: 66044293

GI number: 66044293

Start: 1175474

End: 1175977

Strand: Reverse

Name: fecI [H]

Synonym: Psyr_1040

Alternate gene names: 66044293

Gene position: 1175977-1175474 (Counterclockwise)

Preceding gene: 66044294

Following gene: 66044292

Centisome position: 19.3

GC content: 62.7

Gene sequence:

>504_bases
ATGCCCGTCGCCCACTCCGCTCTCAATCACACTGTCGAAGGCCTGTACAGGGCACACAACGCCTGGCTGACGACCTGGTT
GCGACGCAGACTCGGCTGCCCGCACAGCGCGGCGGACCTGGCGCAGGACACCTTTATCAAGGTGCTGGGCGCACGCGATA
CAGCGCAAATCGTCGAGCCGCGAGCCTTTCTGACGACGATTGCCAAGCGTGTGCTGTGCAATCACTACCGGCGTCAGGAC
CTGGAGCATGCCTACTATCAGGCACTGGCCGAACTGCCGGAGCGCGTGGCGCCTTCGGAAGAAGAGCGGGCGATCATTCT
CGAAACCCTGGTCGAACTCGATCAACTGCTGGACGGCCTGCCAGCACTGGTCAAGCGGGCGTTTCTGCTGTCGCAGGTCG
ACGGCTTGAGCCATGGCCGGATCGCTGCCGAACTGGGTATCTCCATCGCCACGGTCAAGCGTCATCTGCACAAGGCCGCC
CTGCGCTGCTATTTCGCCCTATGA

Upstream 100 bases:

>100_bases
GGAAAAATGAACCGCAATATTAATGATAAATATTCTCATACGCAAAAGAGTCTGCCAGAATCCACGCCACCAATGAGTCC
CCGTGGATTGTTTCCCCGTG

Downstream 100 bases:

>100_bases
ATCCGAACAACGAGTCTTTAAACAAATCCGACATCTCGCCTGCCGTGGCACAGCAGGCCGTTGGCTGGCTGCTGGAAATG
CAGGAAGGCACGCTGGATGC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MPVAHSALNHTVEGLYRAHNAWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTAQIVEPRAFLTTIAKRVLCNHYRRQD
LEHAYYQALAELPERVAPSEEERAIILETLVELDQLLDGLPALVKRAFLLSQVDGLSHGRIAAELGISIATVKRHLHKAA
LRCYFAL

Sequences:

>Translated_167_residues
MPVAHSALNHTVEGLYRAHNAWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTAQIVEPRAFLTTIAKRVLCNHYRRQD
LEHAYYQALAELPERVAPSEEERAIILETLVELDQLLDGLPALVKRAFLLSQVDGLSHGRIAAELGISIATVKRHLHKAA
LRCYFAL
>Mature_166_residues
PVAHSALNHTVEGLYRAHNAWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTAQIVEPRAFLTTIAKRVLCNHYRRQDL
EHAYYQALAELPERVAPSEEERAIILETLVELDQLLDGLPALVKRAFLLSQVDGLSHGRIAAELGISIATVKRHLHKAAL
RCYFAL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=153, Percent_Identity=49.6732026143791, Blast_Score=153, Evalue=6e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18750; Mature: 18619

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVAHSALNHTVEGLYRAHNAWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTAQIVEP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
RAFLTTIAKRVLCNHYRRQDLEHAYYQALAELPERVAPSEEERAIILETLVELDQLLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
PALVKRAFLLSQVDGLSHGRIAAELGISIATVKRHLHKAALRCYFAL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PVAHSALNHTVEGLYRAHNAWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTAQIVEP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
RAFLTTIAKRVLCNHYRRQDLEHAYYQALAELPERVAPSEEERAIILETLVELDQLLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
PALVKRAFLLSQVDGLSHGRIAAELGISIATVKRHLHKAALRCYFAL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]