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The map label for this gene is ycgE [H]

Identifier: 66044215

GI number: 66044215

Start: 1096096

End: 1096998

Strand: Reverse

Name: ycgE [H]

Synonym: Psyr_0962

Alternate gene names: 66044215

Gene position: 1096998-1096096 (Counterclockwise)

Preceding gene: 66044216

Following gene: 66044214

Centisome position: 18.0

GC content: 62.13

Gene sequence:

>903_bases
ATGAATGAAACAGACACAGAGGTGCCGGGCGACTGGTTGCCGATCCGCGAGGTTGCACGGCAGACAGGCGTCAACGCCGT
CACCCTGCGTGCCTGGGAGCGTCGTTACGGGCTGATCGTCCCGCACCGCACCGCCAAAGGTCATCGGCTGTATTCGGACG
AGCATGTGCAGCGCGTCATGAAGATTCTGACCTGGCTCAACCGCGGTGTGTCCGTCAGTCAGGTCAAGGGGCTGATCGAT
GACAATCGCCAGGACGCCCTGCCGCCGACCAACGACTGGGACGCATTGCGTCAGACCTTGCTGGTCGCGATCGGCGAGCT
GGCCGAACGCCGGGTCGATGACGTGTTCAATCAGGCGATGTCGCTGTACCCGCCGCGCACGCTGTGTGAGCAGTTGCTGC
TGCCGCTGCTGGCCGAGCTGGAACAGCGCTGGCAAGGCAAGTTCGGCGCGCAACTGGAGCGCACGTTTTTCTACTCCTGG
CTGCGCAGCAAGTTTGGCGCACGCATCTACCACAACAATCGTCAGCTCAATGGCAGCCCGTTGCTGCTGGTCAATCAGTC
CGATCTGCCGCTGGAACCGCACCTGTGGCTGGCGGCCTGGCTGGTGAGCAGCGCCGATTGCCCGGTCGAGGTGTTCGACT
GGCCGTTGCCGGTCGGCGAGCTGGCGCTGGCAGCCGAATACCTGAAGCCACGCGGCATAGTGCTGTATTCCAGCAAGTCG
CTGAACGTGCTCCATCTGCCCCGATTGCTGGCCAATATCACCTGCCCTGTCGTGCTGGGCGGACCAACGGTGCAGATCCA
TAATGCCGAGTTGCTCGTACAGGCCAAGGAGATATCTGGACTGACCCTTGCCCACGACGTACTCAGCGCTCAGATCGAGC
TGGGCAAGCTCGGACTTATCTAA

Upstream 100 bases:

>100_bases
CAAGCATCATTTTCGCCAACATCCGGACCCGTATGTGGCGCTGCAGGTGTACATGCAGCCCCACCCGGAAAACCTCAGCC
TGCGCAATGCGATTTGACTC

Downstream 100 bases:

>100_bases
GGACTTCTCATGCAACTGATCTGGCTGCGCAGCGACCTGCGCGCTCAAGACAACACTGCCCTGACCGCCGCCATGGAGCG
CGGTCCGACGCTGGCGGTCT

Product: regulatory protein, MerR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNETDTEVPGDWLPIREVARQTGVNAVTLRAWERRYGLIVPHRTAKGHRLYSDEHVQRVMKILTWLNRGVSVSQVKGLID
DNRQDALPPTNDWDALRQTLLVAIGELAERRVDDVFNQAMSLYPPRTLCEQLLLPLLAELEQRWQGKFGAQLERTFFYSW
LRSKFGARIYHNNRQLNGSPLLLVNQSDLPLEPHLWLAAWLVSSADCPVEVFDWPLPVGELALAAEYLKPRGIVLYSSKS
LNVLHLPRLLANITCPVVLGGPTVQIHNAELLVQAKEISGLTLAHDVLSAQIELGKLGLI

Sequences:

>Translated_300_residues
MNETDTEVPGDWLPIREVARQTGVNAVTLRAWERRYGLIVPHRTAKGHRLYSDEHVQRVMKILTWLNRGVSVSQVKGLID
DNRQDALPPTNDWDALRQTLLVAIGELAERRVDDVFNQAMSLYPPRTLCEQLLLPLLAELEQRWQGKFGAQLERTFFYSW
LRSKFGARIYHNNRQLNGSPLLLVNQSDLPLEPHLWLAAWLVSSADCPVEVFDWPLPVGELALAAEYLKPRGIVLYSSKS
LNVLHLPRLLANITCPVVLGGPTVQIHNAELLVQAKEISGLTLAHDVLSAQIELGKLGLI
>Mature_300_residues
MNETDTEVPGDWLPIREVARQTGVNAVTLRAWERRYGLIVPHRTAKGHRLYSDEHVQRVMKILTWLNRGVSVSQVKGLID
DNRQDALPPTNDWDALRQTLLVAIGELAERRVDDVFNQAMSLYPPRTLCEQLLLPLLAELEQRWQGKFGAQLERTFFYSW
LRSKFGARIYHNNRQLNGSPLLLVNQSDLPLEPHLWLAAWLVSSADCPVEVFDWPLPVGELALAAEYLKPRGIVLYSSKS
LNVLHLPRLLANITCPVVLGGPTVQIHNAELLVQAKEISGLTLAHDVLSAQIELGKLGLI

Specific function: Controls the expression of 6 small proteins that may play a role in biofilm maturation. Binds to and represses the operator of the ycgZ-ymgA-ariR-ymgC operon, it also regulates yliL and ynaK. Binding is antagonized by YcgF upon blue-light (470 nm) irradia

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787409, Length=87, Percent_Identity=43.6781609195402, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788448, Length=127, Percent_Identity=37.7952755905512, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 33819; Mature: 33819

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETDTEVPGDWLPIREVARQTGVNAVTLRAWERRYGLIVPHRTAKGHRLYSDEHVQRVM
CCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHCCEEECCCCCCCCCCCCHHHHHHHH
KILTWLNRGVSVSQVKGLIDDNRQDALPPTNDWDALRQTLLVAIGELAERRVDDVFNQAM
HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLYPPRTLCEQLLLPLLAELEQRWQGKFGAQLERTFFYSWLRSKFGARIYHNNRQLNGSP
HCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
LLLVNQSDLPLEPHLWLAAWLVSSADCPVEVFDWPLPVGELALAAEYLKPRGIVLYSSKS
EEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEECCCC
LNVLHLPRLLANITCPVVLGGPTVQIHNAELLVQAKEISGLTLAHDVLSAQIELGKLGLI
CCHHHHHHHHHHCCCCEEECCCEEEEECCEEEEEEHHCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNETDTEVPGDWLPIREVARQTGVNAVTLRAWERRYGLIVPHRTAKGHRLYSDEHVQRVM
CCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHCCEEECCCCCCCCCCCCHHHHHHHH
KILTWLNRGVSVSQVKGLIDDNRQDALPPTNDWDALRQTLLVAIGELAERRVDDVFNQAM
HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLYPPRTLCEQLLLPLLAELEQRWQGKFGAQLERTFFYSWLRSKFGARIYHNNRQLNGSP
HCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
LLLVNQSDLPLEPHLWLAAWLVSSADCPVEVFDWPLPVGELALAAEYLKPRGIVLYSSKS
EEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEECCCC
LNVLHLPRLLANITCPVVLGGPTVQIHNAELLVQAKEISGLTLAHDVLSAQIELGKLGLI
CCHHHHHHHHHHCCCCEEECCCEEEEECCEEEEEEHHCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]