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The map label for this gene is ykgD [C]

Identifier: 66044165

GI number: 66044165

Start: 1032421

End: 1033152

Strand: Direct

Name: ykgD [C]

Synonym: Psyr_0910

Alternate gene names: 66044165

Gene position: 1032421-1033152 (Clockwise)

Preceding gene: 66044164

Following gene: 66044166

Centisome position: 16.94

GC content: 53.83

Gene sequence:

>732_bases
ATGTTTCTAAGCCTTGAAGTTCGCAGCTATGAGAGGAAAGAACCTCACCTCCACCACCACGAGCATGCTCAATTGGTACT
GCCGATTCGTGGCGAAATGGAAATTGACGTAAACGGTCGCGGCGGCTGCATCGATCAGTCATTGGCGGCGCTTGTGAAAC
CTGGCTCTGTGCACTCGCAGCACAGTGACGTCGACAGCCGCTTTTTAGTGTTGGACTGTGCGCCTACGATTTTAGAAACT
CTCCAGATCGGGCGTCTGGCTCGGAGAATATATGTGCCTATTCCCCCTGCAACACGTCGGCTTATCGAGTTCGCCGATCT
AATAGGCAACGCGCAGCTATCCATCGCGGCCTCCCAATTGGCGCCTCTGCTTTTGTCGTCCCTGAATCCGGACATTTCCT
GCTTTTCAGACCCCATGGAGCAATTGATCGCTCGTCTTCGGGCGGATCCCGGAGCGAACTGGAGCAATGAGGCCATGGCT
CAAGTAGCAAAAATGAGCATGAGTCAGTTGCACCAGCGATTCCGGCTATTGTTCGAGATAAGTCCTCAAGCATGGTTGAC
CAGGTTACGCATACAAGAAGCTCAACGATGGTTGCGTGGAACCTCATTACCAATATCCGAGATTGCCTTGCGGGCAGGTT
TTTCCGACCAGGCGTCACTGACCCGCACCATGCAGCGTGTGAGCGCCACGACCCCGGCGGCTTATCGTAAAGCGCAAAAA
CAGTTCGGGTAA

Upstream 100 bases:

>100_bases
GTAGATGTTAGAATCAGTGGCAAGCCTGACCTAACGTAGGTGCGCACTGGCGTTTTGGGACGTCAACCCTGGATAACCAG
ATGGGCCGGAAGGTGCAGTA

Downstream 100 bases:

>100_bases
AAAATTCCACAGTCTCCGACAATATTCCCCGGATCATTTATTCCAGACTTCACCATTGCGCTTTGGAGAGCGGGTGAAAT
GTTTGCTGATAGATCATTGC

Product: helix-turn-helix, AraC type

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; AraC Family Transcriptional Regulator; Transcriptional Regulator Protein; AraC-Like Transcription Regulator; Transcription Regulator Protein; Helix-Turn-Helix AraC Type; Transcription Regulator

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MFLSLEVRSYERKEPHLHHHEHAQLVLPIRGEMEIDVNGRGGCIDQSLAALVKPGSVHSQHSDVDSRFLVLDCAPTILET
LQIGRLARRIYVPIPPATRRLIEFADLIGNAQLSIAASQLAPLLLSSLNPDISCFSDPMEQLIARLRADPGANWSNEAMA
QVAKMSMSQLHQRFRLLFEISPQAWLTRLRIQEAQRWLRGTSLPISEIALRAGFSDQASLTRTMQRVSATTPAAYRKAQK
QFG

Sequences:

>Translated_243_residues
MFLSLEVRSYERKEPHLHHHEHAQLVLPIRGEMEIDVNGRGGCIDQSLAALVKPGSVHSQHSDVDSRFLVLDCAPTILET
LQIGRLARRIYVPIPPATRRLIEFADLIGNAQLSIAASQLAPLLLSSLNPDISCFSDPMEQLIARLRADPGANWSNEAMA
QVAKMSMSQLHQRFRLLFEISPQAWLTRLRIQEAQRWLRGTSLPISEIALRAGFSDQASLTRTMQRVSATTPAAYRKAQK
QFG
>Mature_243_residues
MFLSLEVRSYERKEPHLHHHEHAQLVLPIRGEMEIDVNGRGGCIDQSLAALVKPGSVHSQHSDVDSRFLVLDCAPTILET
LQIGRLARRIYVPIPPATRRLIEFADLIGNAQLSIAASQLAPLLLSSLNPDISCFSDPMEQLIARLRADPGANWSNEAMA
QVAKMSMSQLHQRFRLLFEISPQAWLTRLRIQEAQRWLRGTSLPISEIALRAGFSDQASLTRTMQRVSATTPAAYRKAQK
QFG

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27195; Mature: 27195

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLSLEVRSYERKEPHLHHHEHAQLVLPIRGEMEIDVNGRGGCIDQSLAALVKPGSVHSQ
CEEEEEEHHCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
HSDVDSRFLVLDCAPTILETLQIGRLARRIYVPIPPATRRLIEFADLIGNAQLSIAASQL
CCCCCCEEEEEECCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCHHHHHHHHH
APLLLSSLNPDISCFSDPMEQLIARLRADPGANWSNEAMAQVAKMSMSQLHQRFRLLFEI
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SPQAWLTRLRIQEAQRWLRGTSLPISEIALRAGFSDQASLTRTMQRVSATTPAAYRKAQK
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
QFG
HCC
>Mature Secondary Structure
MFLSLEVRSYERKEPHLHHHEHAQLVLPIRGEMEIDVNGRGGCIDQSLAALVKPGSVHSQ
CEEEEEEHHCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
HSDVDSRFLVLDCAPTILETLQIGRLARRIYVPIPPATRRLIEFADLIGNAQLSIAASQL
CCCCCCEEEEEECCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCHHHHHHHHH
APLLLSSLNPDISCFSDPMEQLIARLRADPGANWSNEAMAQVAKMSMSQLHQRFRLLFEI
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SPQAWLTRLRIQEAQRWLRGTSLPISEIALRAGFSDQASLTRTMQRVSATTPAAYRKAQK
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
QFG
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA