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The map label for this gene is sigK [H]

Identifier: 66044147

GI number: 66044147

Start: 1012825

End: 1013433

Strand: Reverse

Name: sigK [H]

Synonym: Psyr_0892

Alternate gene names: 66044147

Gene position: 1013433-1012825 (Counterclockwise)

Preceding gene: 66044149

Following gene: 66044146

Centisome position: 16.63

GC content: 58.29

Gene sequence:

>609_bases
ATGCGCATAACTGCCAGTCTCAGGACCTTCTGTCACTTGTCCCCCTCTCACAGCGAATCGACAATCACCCGACTTTGGAT
CGATGAAGTCACCGCCGTGGCCCGCCAGAGGGACCGCGACAGCTTCATGCGCATTTACGATCACTTCGCTCCGCGCCTGT
TGCGCTACCTCACCGGGCTGAATGTGCCAGAAGGTCAGGCCGAAGAGTTGGTGCAGGAAGTGCTGCTCAAACTGTGGCAC
AAGGCCGACTCGTTCGACCCGGCCAAGGCCAGCCTGGGGACATGGTTGTTTCGCATCGCACGCAATCTTTACATCGACAG
CGTGCGCAAGGACCGTGGCTGGGTGCAGGTGCAGAACTCGCTGGAACAACTCGAGCGTCTGGAGGCTCCGGTAGATCGAA
CACTCGATTACAGCCAGCGCCAGGAGCAACAACTCAACATCGCCATCCAGAACCTGCCCGCCGATCAGGCCCGAGTGTTG
CGAATGTCGTATTTCGAAGCGCTCAGCCACCGGGAGATTTCCGAACGCTTGGGTATGCCGCTTGGCACAGTGAAGTCCTG
CCTGCGCCTTGCGTTTCAAAAATTGCGCTCGCGGATAGAGGAATCATGA

Upstream 100 bases:

>100_bases
ATGCGCCGCTCGTCACATCCTATGATCCACCCCCCACCCCGTTACGTAACACCTCTGCATCGCGAACCAAACCCACACAA
TGGTGATCAGAAGGTGGATC

Downstream 100 bases:

>100_bases
TGGGCCCACAACATCATCCGGACGACGCCACGCTGGTCAGCTATGCCGCAGGAGCGCTGTCGCAGGTCATCTCGTTAGTC
ACTGCCGCGCACCTGGAGCG

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MRITASLRTFCHLSPSHSESTITRLWIDEVTAVARQRDRDSFMRIYDHFAPRLLRYLTGLNVPEGQAEELVQEVLLKLWH
KADSFDPAKASLGTWLFRIARNLYIDSVRKDRGWVQVQNSLEQLERLEAPVDRTLDYSQRQEQQLNIAIQNLPADQARVL
RMSYFEALSHREISERLGMPLGTVKSCLRLAFQKLRSRIEES

Sequences:

>Translated_202_residues
MRITASLRTFCHLSPSHSESTITRLWIDEVTAVARQRDRDSFMRIYDHFAPRLLRYLTGLNVPEGQAEELVQEVLLKLWH
KADSFDPAKASLGTWLFRIARNLYIDSVRKDRGWVQVQNSLEQLERLEAPVDRTLDYSQRQEQQLNIAIQNLPADQARVL
RMSYFEALSHREISERLGMPLGTVKSCLRLAFQKLRSRIEES
>Mature_202_residues
MRITASLRTFCHLSPSHSESTITRLWIDEVTAVARQRDRDSFMRIYDHFAPRLLRYLTGLNVPEGQAEELVQEVLLKLWH
KADSFDPAKASLGTWLFRIARNLYIDSVRKDRGWVQVQNSLEQLERLEAPVDRTLDYSQRQEQQLNIAIQNLPADQARVL
RMSYFEALSHREISERLGMPLGTVKSCLRLAFQKLRSRIEES

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 23582; Mature: 23582

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRITASLRTFCHLSPSHSESTITRLWIDEVTAVARQRDRDSFMRIYDHFAPRLLRYLTGL
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NVPEGQAEELVQEVLLKLWHKADSFDPAKASLGTWLFRIARNLYIDSVRKDRGWVQVQNS
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LEQLERLEAPVDRTLDYSQRQEQQLNIAIQNLPADQARVLRMSYFEALSHREISERLGMP
HHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
LGTVKSCLRLAFQKLRSRIEES
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRITASLRTFCHLSPSHSESTITRLWIDEVTAVARQRDRDSFMRIYDHFAPRLLRYLTGL
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NVPEGQAEELVQEVLLKLWHKADSFDPAKASLGTWLFRIARNLYIDSVRKDRGWVQVQNS
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LEQLERLEAPVDRTLDYSQRQEQQLNIAIQNLPADQARVLRMSYFEALSHREISERLGMP
HHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
LGTVKSCLRLAFQKLRSRIEES
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA