Click here to switch to the map view.

The map label for this gene is pelL [H]

Identifier: 66044107

GI number: 66044107

Start: 970064

End: 971311

Strand: Reverse

Name: pelL [H]

Synonym: Psyr_0852

Alternate gene names: 66044107

Gene position: 971311-970064 (Counterclockwise)

Preceding gene: 66044108

Following gene: 66044100

Centisome position: 15.94

GC content: 56.81

Gene sequence:

>1248_bases
ATGAGAACGATACTGTTGACGGTCTTGCTGGTCGGTGCTGCAACAGCGCATGCAACTGACTACTACGTGGCCCCCAATGG
CGATGATCACGCTGCAGGTAGCAAAGGCGCACCGTTACGCACCATCATGCAAGCACAGCAAGCCGCAAAAGCCGGCGACA
CGGTGTACTTTCGCGGCGGCCTCTATGCCTACACAGCCGGCATCAACCGCTGCGCCACCCGTACAGACACCGTGAATGCC
ATCACCCTGAACAACAGCGGCAGCGAAAACAAACCTATACGCTATTGGGCCTATCCAGGCGAAACACCGGTTTTCGATTT
CTCAGCCATGAAAGACGATTGTCGCGTCAAAGGCTTCAACGTTACCGGTAGCTGGCTACACCTGAAGGGGCTGGAGGTGA
CCGGCGTGCCGCAACAACCGGAAAACCATCTCAACCACGAGTCATGGGGCATCTGGAACAGCGGCAGCCACAATACCTTC
GAGCAACTCAATCTGCATCACAACATGGGACCCGGCCTGTTCATTCAAAACGGCGGCTATAACCTGGTACTGAATACCGA
CTCCCACCACAACTACGATCCTTACACCTCGAACGGCGCAGGTCAGAGTGCAGACGGCTTCGGCGCGCATATCAAAGCGG
GCCATCCAGGCAATGTATTCCGCGGTTGCAGAGCATGGGCCAATTCCGACGACGGCTTTGACCTGATCAATGCCTTCTCG
CCAGTCACCATCGAAAGCTCATGGGCATGGCAGCAAGGTTACCTGCCTGGCACGCGCACAAAACTTGAAGCGGGCAACGG
CAATGGCATCAAAGCCGGTGGGTACGGCGGCAAGTATGTGCCTGACGGCGTGAAACACAGCGTCCGTAACTCAGTTGCCT
TTGACAATAAGTCCGCTGGTTTCTATGCCAATCACCATACCCTGGCACTGGACTTCATCAACAACACGGCTTTTGCAAAT
GGCGTGAACTACAACATGGCAGGTATCGCCCCGGATGGTTCGCTGATCCCTCTCGGCAACCTGTTCAACAACATCGCCTA
CAAGGGACGGCTGACCGTTAACACCGAAGGACTGGATATGGCACACAACTCCTGGACGTTGCCAACGCCGGTAACCGACG
CAGACTTTGAGGATGTCTCCGATACGGGGTGGGATGCGCCGCGTCAGTCAGACGGAAGCCTGCCGGTGCTGCGCAGCTTC
CACCTGCGACCCGGCAGCAGACTGGCAGGGATGGGGGCGTTCCACTAA

Upstream 100 bases:

>100_bases
TGTTGCAGGCCTCAGGCGAGCAGACTCTTTATTCATCGAATTCATAATGAGGTGCAGTAAACACGCATACGATTACACCA
GGCAGGCTTGGAGTGACCCC

Downstream 100 bases:

>100_bases
ACCTCGCGGAGTCTCTGGCTGCATTGCAGCGGGGTGAGTCAGGCAGGGAACGCACATCGAACAATAAACCCCAGACAAAC
AAAAACCCTCAACGCGTAAG

Product: pectate lyase

Products: NA

Alternate protein names: Pectate transeliminase [H]

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MRTILLTVLLVGAATAHATDYYVAPNGDDHAAGSKGAPLRTIMQAQQAAKAGDTVYFRGGLYAYTAGINRCATRTDTVNA
ITLNNSGSENKPIRYWAYPGETPVFDFSAMKDDCRVKGFNVTGSWLHLKGLEVTGVPQQPENHLNHESWGIWNSGSHNTF
EQLNLHHNMGPGLFIQNGGYNLVLNTDSHHNYDPYTSNGAGQSADGFGAHIKAGHPGNVFRGCRAWANSDDGFDLINAFS
PVTIESSWAWQQGYLPGTRTKLEAGNGNGIKAGGYGGKYVPDGVKHSVRNSVAFDNKSAGFYANHHTLALDFINNTAFAN
GVNYNMAGIAPDGSLIPLGNLFNNIAYKGRLTVNTEGLDMAHNSWTLPTPVTDADFEDVSDTGWDAPRQSDGSLPVLRSF
HLRPGSRLAGMGAFH

Sequences:

>Translated_415_residues
MRTILLTVLLVGAATAHATDYYVAPNGDDHAAGSKGAPLRTIMQAQQAAKAGDTVYFRGGLYAYTAGINRCATRTDTVNA
ITLNNSGSENKPIRYWAYPGETPVFDFSAMKDDCRVKGFNVTGSWLHLKGLEVTGVPQQPENHLNHESWGIWNSGSHNTF
EQLNLHHNMGPGLFIQNGGYNLVLNTDSHHNYDPYTSNGAGQSADGFGAHIKAGHPGNVFRGCRAWANSDDGFDLINAFS
PVTIESSWAWQQGYLPGTRTKLEAGNGNGIKAGGYGGKYVPDGVKHSVRNSVAFDNKSAGFYANHHTLALDFINNTAFAN
GVNYNMAGIAPDGSLIPLGNLFNNIAYKGRLTVNTEGLDMAHNSWTLPTPVTDADFEDVSDTGWDAPRQSDGSLPVLRSF
HLRPGSRLAGMGAFH
>Mature_415_residues
MRTILLTVLLVGAATAHATDYYVAPNGDDHAAGSKGAPLRTIMQAQQAAKAGDTVYFRGGLYAYTAGINRCATRTDTVNA
ITLNNSGSENKPIRYWAYPGETPVFDFSAMKDDCRVKGFNVTGSWLHLKGLEVTGVPQQPENHLNHESWGIWNSGSHNTF
EQLNLHHNMGPGLFIQNGGYNLVLNTDSHHNYDPYTSNGAGQSADGFGAHIKAGHPGNVFRGCRAWANSDDGFDLINAFS
PVTIESSWAWQQGYLPGTRTKLEAGNGNGIKAGGYGGKYVPDGVKHSVRNSVAFDNKSAGFYANHHTLALDFINNTAFAN
GVNYNMAGIAPDGSLIPLGNLFNNIAYKGRLTVNTEGLDMAHNSWTLPTPVTDADFEDVSDTGWDAPRQSDGSLPVLRSF
HLRPGSRLAGMGAFH

Specific function: Presents an endo-cleaving activity on polygalacturonate or partially methylated pectin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: NA

EC number: =4.2.2.2 [H]

Molecular weight: Translated: 44676; Mature: 44676

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTILLTVLLVGAATAHATDYYVAPNGDDHAAGSKGAPLRTIMQAQQAAKAGDTVYFRGG
CHHHHEEHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC
LYAYTAGINRCATRTDTVNAITLNNSGSENKPIRYWAYPGETPVFDFSAMKDDCRVKGFN
EEEEECCCHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEHHCCCCCCEEEEEC
VTGSWLHLKGLEVTGVPQQPENHLNHESWGIWNSGSHNTFEQLNLHHNMGPGLFIQNGGY
CCCCEEEEECCEEECCCCCCHHHCCCCCCCCCCCCCCCCHHHEEEECCCCCCEEEECCCE
NLVLNTDSHHNYDPYTSNGAGQSADGFGAHIKAGHPGNVFRGCRAWANSDDGFDLINAFS
EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHCCC
PVTIESSWAWQQGYLPGTRTKLEAGNGNGIKAGGYGGKYVPDGVKHSVRNSVAFDNKSAG
CEEEECCCCHHCCCCCCCCEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHEECCCCCC
FYANHHTLALDFINNTAFANGVNYNMAGIAPDGSLIPLGNLFNNIAYKGRLTVNTEGLDM
EEECCEEEEEEEECCCEEECCCCCCEEEECCCCCEEEHHHHHHHHEECCEEEEECCCCEE
AHNSWTLPTPVTDADFEDVSDTGWDAPRQSDGSLPVLRSFHLRPGSRLAGMGAFH
CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTILLTVLLVGAATAHATDYYVAPNGDDHAAGSKGAPLRTIMQAQQAAKAGDTVYFRGG
CHHHHEEHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC
LYAYTAGINRCATRTDTVNAITLNNSGSENKPIRYWAYPGETPVFDFSAMKDDCRVKGFN
EEEEECCCHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEHHCCCCCCEEEEEC
VTGSWLHLKGLEVTGVPQQPENHLNHESWGIWNSGSHNTFEQLNLHHNMGPGLFIQNGGY
CCCCEEEEECCEEECCCCCCHHHCCCCCCCCCCCCCCCCHHHEEEECCCCCCEEEECCCE
NLVLNTDSHHNYDPYTSNGAGQSADGFGAHIKAGHPGNVFRGCRAWANSDDGFDLINAFS
EEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHCCC
PVTIESSWAWQQGYLPGTRTKLEAGNGNGIKAGGYGGKYVPDGVKHSVRNSVAFDNKSAG
CEEEECCCCHHCCCCCCCCEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHEECCCCCC
FYANHHTLALDFINNTAFANGVNYNMAGIAPDGSLIPLGNLFNNIAYKGRLTVNTEGLDM
EEECCEEEEEEEECCCEEECCCCCCEEEECCCCCEEEHHHHHHHHEECCEEEEECCCCEE
AHNSWTLPTPVTDADFEDVSDTGWDAPRQSDGSLPVLRSFHLRPGSRLAGMGAFH
CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8577252 [H]