| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is 66044096
Identifier: 66044096
GI number: 66044096
Start: 952266
End: 953936
Strand: Reverse
Name: 66044096
Synonym: Psyr_0841
Alternate gene names: NA
Gene position: 953936-952266 (Counterclockwise)
Preceding gene: 66044100
Following gene: 66044095
Centisome position: 15.65
GC content: 59.9
Gene sequence:
>1671_bases ATGGGCGCGGATTATACGCACTTTACCGAGGATCGACAGACGCCCGAGTCAGCGGTTTGCAGCCTCGCGCCAAGCGGCCA TAATGGCGGCATCGTGTACTTACATTTTGAACACATTCCTGAAGGATCGACCGTGAGCCAGTCTTTGATTGCTGCCCTGC AGAACCCTGCCCTCTTCCCCCATCCGGTGGAGAGTTTCCAGGTCATCGAAACGCACATTTCCTGGGTGCTGCTGACGGGT CCGTATGCCTACAAATTCAAAAAGCCGATGAACTTCGGCTTTCTGGATTTCACCACGCTGGCCCTGCGCAAGCACTTCTG CGAAGAAGAGTTGCGCCTGAATCAGCGTCTGACCGACGATCTCTACATCGAAGTCCTGCCAATCACTGGCACAGAGGACA CGCCGCAACTGGGCGGCGACGGTGAAGCGATCGAATACGCGCTGAAGATGAAACAGTTCTCGCAGGATGGCCTGCTGAGC ACGCTGCAGGCCAACGGTGAATTGACGACTGCGCACATCGACGAACTGGCGCGCCAGATTGCCGGTTTTCACCTGACCTC GCCGCAGGTCGGAGCTGAAAGCGAACTGGGCTCGGCTGACAGCGTGATGGCCCCGGTGGTACAGAATTTCGAGCAGATTC GCCCGCTGATCAGCGAAAAATCCGACCTGGCACAGCTTGATGCCCTGCACGCGTGGGCAGAGTCGAGCTTTGCGCGACTC AAGCCGTTGCTGGCCCACCGCAAGGCCGATGGGTTCATCCGTGAGTGCCATGGCGACATTCATCTGGGCAATGCGACGGT GATTGATGGCAAGGTCGTGCTGTTCGACTGCATCGAGTTCAACGAGCCGTTCCGCAAGACGGATGTCTATGCCGACATCG GCTTTCTGGCAATGGACCTTGAAGACCGTGGCCTGAAGTCGCTGTCACGGCGTTTGATCAGTCAGTACCTGGAAGTCACC GGCGACTACGCGGGCCTGGAGCTGTTGAATTTCTATAAGGCCTACCGCGCAATGGTCCGCGCCAAGGTGGCACTGTTCAG CCAGCCGGCCGATGCCGACGGCTTGCAGCGCGCGGCGACGCTTCGTCAGTACCGCAACTATGCCAATCTGGCCGAGAGCT ACAGCGCCATCCCTTCACCATTCCTGACGATCACCCACGGTGTCTCTGCCGTTGGCAAAAGCCACGTTGCGATGCGTCTG GTGGAGTCGCTGGGCGCCATCCGCCTGCGCTCGGACGTAGAGCGCAAGCGCCTGTTTGCCGGCCAGGGTCAGGATCTGTA TGACGCGCAAGCCAGCAGCACAACCTATGCACGCCTGCATGAGCTGGCCACCGCAACCCTGCGCGCAGGCTTCTCGGTGG TAATCGATGCCACTTACCTCAAGCGCGAGCAGCGCGATGCGGCGGCAAAGGTTGCCGAAAACACCGGCGTCCCGTTCCTG ATTCTGGATTGCGAAGCACCGCAGGCGGTGATCGCTGGCTGGCTTGCGCAGCGTCAGGCACAGGACAACGACCCCTCTGA CGCGACACTGGAAGTCATCGAGGCTCAGCAGGCCAGTCGCGAGCCGCTCGGCGCCGACGAAATCCTGCGCAGCAAGAAGG TTGCAACCAACGTCAGCAGCGATCTGGACAGCCTTATCGACAACCTGCGTCAGCGCATGCCGGGTCTGTAA
Upstream 100 bases:
>100_bases AACCAGGCCGACAATACCGAGCTTCAACGCCCAGCCCAGCCACTTGTTAAGGCTGCGGGGAGGTTGTTTTTTTGCAGAAC GAGAGGTGCGGGATCGAGTC
Downstream 100 bases:
>100_bases AACGACACATGGCCGTTGAGCGGTTAGCGCTTCACGGCCTTACAATGATGGCGATATACTGGCGCCACAATTCCAACGCA ATGACATGTCGGAGGCCATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 556; Mature: 555
Protein sequence:
>556_residues MGADYTHFTEDRQTPESAVCSLAPSGHNGGIVYLHFEHIPEGSTVSQSLIAALQNPALFPHPVESFQVIETHISWVLLTG PYAYKFKKPMNFGFLDFTTLALRKHFCEEELRLNQRLTDDLYIEVLPITGTEDTPQLGGDGEAIEYALKMKQFSQDGLLS TLQANGELTTAHIDELARQIAGFHLTSPQVGAESELGSADSVMAPVVQNFEQIRPLISEKSDLAQLDALHAWAESSFARL KPLLAHRKADGFIRECHGDIHLGNATVIDGKVVLFDCIEFNEPFRKTDVYADIGFLAMDLEDRGLKSLSRRLISQYLEVT GDYAGLELLNFYKAYRAMVRAKVALFSQPADADGLQRAATLRQYRNYANLAESYSAIPSPFLTITHGVSAVGKSHVAMRL VESLGAIRLRSDVERKRLFAGQGQDLYDAQASSTTYARLHELATATLRAGFSVVIDATYLKREQRDAAAKVAENTGVPFL ILDCEAPQAVIAGWLAQRQAQDNDPSDATLEVIEAQQASREPLGADEILRSKKVATNVSSDLDSLIDNLRQRMPGL
Sequences:
>Translated_556_residues MGADYTHFTEDRQTPESAVCSLAPSGHNGGIVYLHFEHIPEGSTVSQSLIAALQNPALFPHPVESFQVIETHISWVLLTG PYAYKFKKPMNFGFLDFTTLALRKHFCEEELRLNQRLTDDLYIEVLPITGTEDTPQLGGDGEAIEYALKMKQFSQDGLLS TLQANGELTTAHIDELARQIAGFHLTSPQVGAESELGSADSVMAPVVQNFEQIRPLISEKSDLAQLDALHAWAESSFARL KPLLAHRKADGFIRECHGDIHLGNATVIDGKVVLFDCIEFNEPFRKTDVYADIGFLAMDLEDRGLKSLSRRLISQYLEVT GDYAGLELLNFYKAYRAMVRAKVALFSQPADADGLQRAATLRQYRNYANLAESYSAIPSPFLTITHGVSAVGKSHVAMRL VESLGAIRLRSDVERKRLFAGQGQDLYDAQASSTTYARLHELATATLRAGFSVVIDATYLKREQRDAAAKVAENTGVPFL ILDCEAPQAVIAGWLAQRQAQDNDPSDATLEVIEAQQASREPLGADEILRSKKVATNVSSDLDSLIDNLRQRMPGL >Mature_555_residues GADYTHFTEDRQTPESAVCSLAPSGHNGGIVYLHFEHIPEGSTVSQSLIAALQNPALFPHPVESFQVIETHISWVLLTGP YAYKFKKPMNFGFLDFTTLALRKHFCEEELRLNQRLTDDLYIEVLPITGTEDTPQLGGDGEAIEYALKMKQFSQDGLLST LQANGELTTAHIDELARQIAGFHLTSPQVGAESELGSADSVMAPVVQNFEQIRPLISEKSDLAQLDALHAWAESSFARLK PLLAHRKADGFIRECHGDIHLGNATVIDGKVVLFDCIEFNEPFRKTDVYADIGFLAMDLEDRGLKSLSRRLISQYLEVTG DYAGLELLNFYKAYRAMVRAKVALFSQPADADGLQRAATLRQYRNYANLAESYSAIPSPFLTITHGVSAVGKSHVAMRLV ESLGAIRLRSDVERKRLFAGQGQDLYDAQASSTTYARLHELATATLRAGFSVVIDATYLKREQRDAAAKVAENTGVPFLI LDCEAPQAVIAGWLAQRQAQDNDPSDATLEVIEAQQASREPLGADEILRSKKVATNVSSDLDSLIDNLRQRMPGL
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 61271; Mature: 61140
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGADYTHFTEDRQTPESAVCSLAPSGHNGGIVYLHFEHIPEGSTVSQSLIAALQNPALFP CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCC HPVESFQVIETHISWVLLTGPYAYKFKKPMNFGFLDFTTLALRKHFCEEELRLNQRLTDD CCCHHHHHHHHHHCEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC LYIEVLPITGTEDTPQLGGDGEAIEYALKMKQFSQDGLLSTLQANGELTTAHIDELARQI EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEHHHHHHHHHHH AGFHLTSPQVGAESELGSADSVMAPVVQNFEQIRPLISEKSDLAQLDALHAWAESSFARL HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH KPLLAHRKADGFIRECHGDIHLGNATVIDGKVVLFDCIEFNEPFRKTDVYADIGFLAMDL HHHHHHHHCCCHHHHHCCCEEECCEEEECCCEEEEEEHHCCCCHHHHHHHEECCEEEECC EDRGLKSLSRRLISQYLEVTGDYAGLELLNFYKAYRAMVRAKVALFSQPADADGLQRAAT CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LRQYRNYANLAESYSAIPSPFLTITHGVSAVGKSHVAMRLVESLGAIRLRSDVERKRLFA HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GQGQDLYDAQASSTTYARLHELATATLRAGFSVVIDATYLKREQRDAAAKVAENTGVPFL CCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEE ILDCEAPQAVIAGWLAQRQAQDNDPSDATLEVIEAQQASREPLGADEILRSKKVATNVSS EEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH DLDSLIDNLRQRMPGL HHHHHHHHHHHHCCCC >Mature Secondary Structure GADYTHFTEDRQTPESAVCSLAPSGHNGGIVYLHFEHIPEGSTVSQSLIAALQNPALFP CCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCC HPVESFQVIETHISWVLLTGPYAYKFKKPMNFGFLDFTTLALRKHFCEEELRLNQRLTDD CCCHHHHHHHHHHCEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC LYIEVLPITGTEDTPQLGGDGEAIEYALKMKQFSQDGLLSTLQANGELTTAHIDELARQI EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEHHHHHHHHHHH AGFHLTSPQVGAESELGSADSVMAPVVQNFEQIRPLISEKSDLAQLDALHAWAESSFARL HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH KPLLAHRKADGFIRECHGDIHLGNATVIDGKVVLFDCIEFNEPFRKTDVYADIGFLAMDL HHHHHHHHCCCHHHHHCCCEEECCEEEECCCEEEEEEHHCCCCHHHHHHHEECCEEEECC EDRGLKSLSRRLISQYLEVTGDYAGLELLNFYKAYRAMVRAKVALFSQPADADGLQRAAT CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LRQYRNYANLAESYSAIPSPFLTITHGVSAVGKSHVAMRLVESLGAIRLRSDVERKRLFA HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GQGQDLYDAQASSTTYARLHELATATLRAGFSVVIDATYLKREQRDAAAKVAENTGVPFL CCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEE ILDCEAPQAVIAGWLAQRQAQDNDPSDATLEVIEAQQASREPLGADEILRSKKVATNVSS EEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH DLDSLIDNLRQRMPGL HHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]