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The map label for this gene is pilC [H]

Identifier: 66044052

GI number: 66044052

Start: 902289

End: 903506

Strand: Reverse

Name: pilC [H]

Synonym: Psyr_0797

Alternate gene names: 66044052

Gene position: 903506-902289 (Counterclockwise)

Preceding gene: 66044053

Following gene: 66044051

Centisome position: 14.83

GC content: 49.1

Gene sequence:

>1218_bases
ATGGCCAGCAAGGCAGCAAAAGTCATCGTTTACACTTGGGAAGGTGTTGACAAGAAAGGTACTAAAACCAGTGGGGAACT
GAGTGGCCATAACTTGGCCCTTGTAAAAGCCCAGCTGCGCAAGCAAGGCATCAACCCAACCAAGGTACGCAAAAAATCAG
TTTCGATCTTTGGCAAGGGCAAGAAGATCAAACCGCTGGACATTGCGTTCTTTTCTCGCCAGATGGCTACGATGATGAAG
GCCGGTGTGCCATTGCTGCAATCGTTTGACATCATTAGCGAAGGCGCTGAGAACCCTAACATGCGCGCATTGGTTGGTTC
GCTAAAGCAGGAAGTTTCGGCAGGTAATAGTTTTGCGACGGCTCTGCGACAAAAACCCGAATATTTCGATGATCTGTTTT
GTAACCTAGTAGATGCCGGCGAGCAAGCTGGCGCACTTGAAAGCCTGCTGGACCGTGTAGCGAGCTATAAAGAGAAGACC
GAAAAGCTAAAAGCTAAAATCAAGAAAGCCATGACATACCCGATTGCCGTATTGATTGTTGCATTGATTGTATCCGGCAT
TCTGCTGATCAAAGTGGTGCCGCAGTTCCAGTCAGTCTTCGCTAGCTTTGGCGCTCAGTTACCGACGTTTACCCTGATGG
TTATTGGTCTATCGGACGTCGTACAAAAATGGTGGCTGGCCATTGTCGGGCTATTTTTCGTCAGCTTTTTTATTTTTAAA
CGTGCTTACAAACAGTCTCAAAAGTTTCGAGATAGCCTCGACCGACTTCTGCTGAAAGTGCCCATCATTGGGCCGTTAAT
TTTCAAATCTTCGGTAGCACGCTACGCGCGCACGCTTGCAACAACGTTTGCCGCTGGCGTCCCGCTTGTGGAGGCTTTGG
ACTCAGTCGCCGGAGCGACTGGCAATGTAGTATTTAAAAATGCAGTCATCAAGGTAAAACAGGACGTCTCCACGGGTATG
CAACTGAATTTCTCGATGCGTTCAACAGGAGTGTTTCCGAGCTTGGCGATTCAGATGACAGCCATTGGCGAAGAGTCCGG
CGCGCTGGACACCATGCTCGACAAGGTAGCTACCTATTACGAGGACGAAGTCGATAACATGGTCGACAATCTGACCAGCC
TTATGGAACCGATGATCATGGCCTTTTTGGGCGTGATAGTTGGCGGGCTGGTAATCGCGATGTATCTACCTATCTTCCAA
CTCGGAAACGTCGTCTGA

Upstream 100 bases:

>100_bases
GCAAGGACGGTTTCAATGACCTGCGAACCTCAGGCCTGTCAAAAGCTATGCAGGGCATTACCAGCCTTGAAGAAGTCAAC
CGTGTGACCAAGGATTAAAC

Downstream 100 bases:

>100_bases
CATGCCCCTCCTCGACCTCCTGGCCAGCTCACCCCTGGCCTTCGTCACCACCTGCTGCATTCTCGGCCTGATCATCGGAA
GCTTCCTCAACGTGATCGTC

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MASKAAKVIVYTWEGVDKKGTKTSGELSGHNLALVKAQLRKQGINPTKVRKKSVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
EKLKAKIKKAMTYPIAVLIVALIVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWLAIVGLFFVSFFIFK
RAYKQSQKFRDSLDRLLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFKNAVIKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLVIAMYLPIFQ
LGNVV

Sequences:

>Translated_405_residues
MASKAAKVIVYTWEGVDKKGTKTSGELSGHNLALVKAQLRKQGINPTKVRKKSVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
EKLKAKIKKAMTYPIAVLIVALIVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWLAIVGLFFVSFFIFK
RAYKQSQKFRDSLDRLLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFKNAVIKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLVIAMYLPIFQ
LGNVV
>Mature_404_residues
ASKAAKVIVYTWEGVDKKGTKTSGELSGHNLALVKAQLRKQGINPTKVRKKSVSIFGKGKKIKPLDIAFFSRQMATMMKA
GVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKTE
KLKAKIKKAMTYPIAVLIVALIVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWLAIVGLFFVSFFIFKR
AYKQSQKFRDSLDRLLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFKNAVIKVKQDVSTGMQ
LNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLVIAMYLPIFQL
GNVV

Specific function: Involved in the translocation of the type IV pilin (pilA) [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=399, Percent_Identity=28.5714285714286, Blast_Score=201, Evalue=7e-53,
Organism=Escherichia coli, GI1786295, Length=407, Percent_Identity=28.992628992629, Blast_Score=178, Evalue=7e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44125; Mature: 43993

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ASKAAKVIVYTWEGVDKKGTKTSGELSGHNLALVKAQLRKQGINPTKVRKKSVSIFGKG
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHEECC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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1971619; 10984043 [H]