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The map label for this gene is rbsC [H]

Identifier: 66044029

GI number: 66044029

Start: 878618

End: 879637

Strand: Reverse

Name: rbsC [H]

Synonym: Psyr_0774

Alternate gene names: 66044029

Gene position: 879637-878618 (Counterclockwise)

Preceding gene: 66044030

Following gene: 66044028

Centisome position: 14.44

GC content: 63.14

Gene sequence:

>1020_bases
ATGAAAACGCTCGATCTCACGCGCCAACGCATTCTGCCGCAGTCGCTGTTCAAGCGCCTGCTGCATGATTTTCCCGGCGT
GGTCAGCATCGGCCTGTTTTTCGCCCTGTGCTTTGTGCTGTTCGCACTGGTGACCGATAACTTTTTAAGCGGTGCCAATC
TGCTCAACGTTATCCGGCAAAACGCGCCGTTATTGATTGTCGCGGTGGCGATGACGCTGGTGGTCACCACCGGCGGCATC
GACCTGTCGGTCGGCTCGACCCTGGCGCTGGTCGGTGCGCTGGCGGCCATGGCGCTCAATGCCTGGCACCTGCCCTGGCC
GCTGGTTCTGCTCGGCGGGCTTGCGGTCGGCGCGATGATCGGGGCGCTGAACGGCTACTTCATCGCCTACGCGGGCATCC
CGGCCTTTATCGTCACCCTGGCCACCCTGACCATTATTCGTGGCCTGGCGATGCTGCTGACGCAAGGCTATTCGATCCCC
GTCCCACGCGAAGAAGCGGCGTTTCTGGCCCTCGGGCGCGGCTGGTTTCTCGGCGTGCCGCTGACCGCCTGGCTGGCCTT
GCTGGTCACGCTGGGCGGGGTGCTGGTGCTCGGCAAAATGCGTTTTGGCCGCTACCTCACGGGCATCGGTGCCAACGCTG
AAAGCGTGCGCCGCGCCGGGGTGAATCATCGCGGTGTGCTGCTGCGGGTCTACATGCTCAGCGGCATGGCGGCCGCCCTG
GCCGGCATGATCGTCACCGCCAGGCTGGGCAGTGGTTCCTCGAATCAGGGCGAAGGTTTCGAACTGGAAGTGATTGCTGC
CGTGGTCCTCGGCAGCACCAGCCTGTTCGGTGGCTTCGGCACGATTGTCGGCACACTGTTAGGGGTGCTTACCATGGCTG
CAATCAAGAACGGGCTGATTCTGGCCCACGTCTCACCGTTTTACACGCAAATCGCCACGGGCCTGATCGTACTGCTGGCG
ATCTGGCTGAACACACGCATTCTACGTACCGGCCGTCCACTCGGGAGGGCTGGAGCATGA

Upstream 100 bases:

>100_bases
AGCGAAGGATTGCCGACACCGACCTCAACGAGGTCGTCGAACTCATTGTCGGGCATAAATTCACTGCCCGCTCCGCTAGC
GCCTGAAAGGATGTGACGCC

Downstream 100 bases:

>100_bases
GCCTGTTTCGTCACCCTTCACCCCTGCCCCTCGGGGTCGACAGCGGCCATGCCATGACGGTGCTGGGGCCGGTGCCGGTC
GAGCGCCTTGGCGTCACCCT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKTLDLTRQRILPQSLFKRLLHDFPGVVSIGLFFALCFVLFALVTDNFLSGANLLNVIRQNAPLLIVAVAMTLVVTTGGI
DLSVGSTLALVGALAAMALNAWHLPWPLVLLGGLAVGAMIGALNGYFIAYAGIPAFIVTLATLTIIRGLAMLLTQGYSIP
VPREEAAFLALGRGWFLGVPLTAWLALLVTLGGVLVLGKMRFGRYLTGIGANAESVRRAGVNHRGVLLRVYMLSGMAAAL
AGMIVTARLGSGSSNQGEGFELEVIAAVVLGSTSLFGGFGTIVGTLLGVLTMAAIKNGLILAHVSPFYTQIATGLIVLLA
IWLNTRILRTGRPLGRAGA

Sequences:

>Translated_339_residues
MKTLDLTRQRILPQSLFKRLLHDFPGVVSIGLFFALCFVLFALVTDNFLSGANLLNVIRQNAPLLIVAVAMTLVVTTGGI
DLSVGSTLALVGALAAMALNAWHLPWPLVLLGGLAVGAMIGALNGYFIAYAGIPAFIVTLATLTIIRGLAMLLTQGYSIP
VPREEAAFLALGRGWFLGVPLTAWLALLVTLGGVLVLGKMRFGRYLTGIGANAESVRRAGVNHRGVLLRVYMLSGMAAAL
AGMIVTARLGSGSSNQGEGFELEVIAAVVLGSTSLFGGFGTIVGTLLGVLTMAAIKNGLILAHVSPFYTQIATGLIVLLA
IWLNTRILRTGRPLGRAGA
>Mature_339_residues
MKTLDLTRQRILPQSLFKRLLHDFPGVVSIGLFFALCFVLFALVTDNFLSGANLLNVIRQNAPLLIVAVAMTLVVTTGGI
DLSVGSTLALVGALAAMALNAWHLPWPLVLLGGLAVGAMIGALNGYFIAYAGIPAFIVTLATLTIIRGLAMLLTQGYSIP
VPREEAAFLALGRGWFLGVPLTAWLALLVTLGGVLVLGKMRFGRYLTGIGANAESVRRAGVNHRGVLLRVYMLSGMAAAL
AGMIVTARLGSGSSNQGEGFELEVIAAVVLGSTSLFGGFGTIVGTLLGVLTMAAIKNGLILAHVSPFYTQIATGLIVLLA
IWLNTRILRTGRPLGRAGA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=297, Percent_Identity=41.4141414141414, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1788896, Length=298, Percent_Identity=37.9194630872483, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI145693152, Length=301, Percent_Identity=35.2159468438538, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI87082395, Length=320, Percent_Identity=36.5625, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1790524, Length=302, Percent_Identity=31.4569536423841, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1789992, Length=350, Percent_Identity=32, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=34.8837209302326, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787793, Length=282, Percent_Identity=32.6241134751773, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788471, Length=312, Percent_Identity=33.6538461538462, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787794, Length=259, Percent_Identity=32.4324324324324, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35460; Mature: 35460

Theoretical pI: Translated: 11.35; Mature: 11.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLDLTRQRILPQSLFKRLLHDFPGVVSIGLFFALCFVLFALVTDNFLSGANLLNVIRQ
CCCHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
NAPLLIVAVAMTLVVTTGGIDLSVGSTLALVGALAAMALNAWHLPWPLVLLGGLAVGAMI
CCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
GALNGYFIAYAGIPAFIVTLATLTIIRGLAMLLTQGYSIPVPREEAAFLALGRGWFLGVP
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCEECCC
LTAWLALLVTLGGVLVLGKMRFGRYLTGIGANAESVRRAGVNHRGVLLRVYMLSGMAAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH
AGMIVTARLGSGSSNQGEGFELEVIAAVVLGSTSLFGGFGTIVGTLLGVLTMAAIKNGLI
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE
LAHVSPFYTQIATGLIVLLAIWLNTRILRTGRPLGRAGA
EEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKTLDLTRQRILPQSLFKRLLHDFPGVVSIGLFFALCFVLFALVTDNFLSGANLLNVIRQ
CCCHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
NAPLLIVAVAMTLVVTTGGIDLSVGSTLALVGALAAMALNAWHLPWPLVLLGGLAVGAMI
CCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
GALNGYFIAYAGIPAFIVTLATLTIIRGLAMLLTQGYSIPVPREEAAFLALGRGWFLGVP
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCEECCC
LTAWLALLVTLGGVLVLGKMRFGRYLTGIGANAESVRRAGVNHRGVLLRVYMLSGMAAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH
AGMIVTARLGSGSSNQGEGFELEVIAAVVLGSTSLFGGFGTIVGTLLGVLTMAAIKNGLI
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE
LAHVSPFYTQIATGLIVLLAIWLNTRILRTGRPLGRAGA
EEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]