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The map label for this gene is qacF [H]

Identifier: 66043808

GI number: 66043808

Start: 611398

End: 611730

Strand: Reverse

Name: qacF [H]

Synonym: Psyr_0541

Alternate gene names: 66043808

Gene position: 611730-611398 (Counterclockwise)

Preceding gene: 66043810

Following gene: 66043807

Centisome position: 10.04

GC content: 58.86

Gene sequence:

>333_bases
ATGAACGCTTATTACCTGTTGGCTATCGCCGTTTGCGCGGAAGTCATCGCCACCACGTCCATGAAAGCCGTGAAGGGGTT
CAGCACCCCGCTGCCCCTGGTGCTGTTGATTACCGGCTATGCGATCGCGTTCTGGATGCTGATTCTGGTGATGCGCACGA
TCCCGGTGGGCATCACTTACGCCATCTGGTCGGGCATGGGCATTGTCATGGTCAGCATCGCGGCGTTCTTCATCTACGGC
CAGAAACTCGACCTGCCCGCGTTGTTGGGCATGGGCATGATCGTGGCGGGCGTGGCGGTCATTCAGCTGTTCTCGAAAAC
CGCCGGGCATTGA

Upstream 100 bases:

>100_bases
GAAACAGTACGGTATAAAGAGTTCTATTCATGGGCGCGGAGTTTATCAGCCCGCCATCACAAGTCGCTAGAATGCGCAGC
CTGACGAAAAGGAATGCACC

Downstream 100 bases:

>100_bases
AAACCCGATCCTTTATAATGCTGGTACTTTTCGCTCACTGAGGTGCTCATGCCATCGGTTATTTCCACTGACGTGCTGAT
TGTCGGGGCTGGCGTCGCCG

Product: small multidrug resistance protein

Products: Proton [Cytoplasm]; multidrug [Periplasm] [C]

Alternate protein names: Quaternary ammonium determinant F [H]

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MNAYYLLAIAVCAEVIATTSMKAVKGFSTPLPLVLLITGYAIAFWMLILVMRTIPVGITYAIWSGMGIVMVSIAAFFIYG
QKLDLPALLGMGMIVAGVAVIQLFSKTAGH

Sequences:

>Translated_110_residues
MNAYYLLAIAVCAEVIATTSMKAVKGFSTPLPLVLLITGYAIAFWMLILVMRTIPVGITYAIWSGMGIVMVSIAAFFIYG
QKLDLPALLGMGMIVAGVAVIQLFSKTAGH
>Mature_110_residues
MNAYYLLAIAVCAEVIATTSMKAVKGFSTPLPLVLLITGYAIAFWMLILVMRTIPVGITYAIWSGMGIVMVSIAAFFIYG
QKLDLPALLGMGMIVAGVAVIQLFSKTAGH

Specific function: Multidrug exporter. Is implicated for the resistance to bacteriocidal quaternary ammonium compounds [H]

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family [H]

Homologues:

Organism=Escherichia coli, GI1786755, Length=110, Percent_Identity=48.1818181818182, Blast_Score=101, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000390 [H]

Pfam domain/function: PF00893 Multi_Drug_Res [H]

EC number: NA

Molecular weight: Translated: 11717; Mature: 11717

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAYYLLAIAVCAEVIATTSMKAVKGFSTPLPLVLLITGYAIAFWMLILVMRTIPVGITY
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AIWSGMGIVMVSIAAFFIYGQKLDLPALLGMGMIVAGVAVIQLFSKTAGH
HHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNAYYLLAIAVCAEVIATTSMKAVKGFSTPLPLVLLITGYAIAFWMLILVMRTIPVGITY
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AIWSGMGIVMVSIAAFFIYGQKLDLPALLGMGMIVAGVAVIQLFSKTAGH
HHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; multidrug [Cytoplasm] [C]

Specific reaction: Proton [Periplasm] + multidrug [Cytoplasm] = Proton [Cytoplasm] + multidrug [Periplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9756755 [H]