| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is aceE [H]
Identifier: 66043785
GI number: 66043785
Start: 576281
End: 578926
Strand: Reverse
Name: aceE [H]
Synonym: Psyr_0518
Alternate gene names: 66043785
Gene position: 578926-576281 (Counterclockwise)
Preceding gene: 66043794
Following gene: 66043784
Centisome position: 9.5
GC content: 59.75
Gene sequence:
>2646_bases ATGCAAGACCTCGATCCCGTCGAAACCCAGGAATGGCTGGACGCCCTGGAATCGGTTCTCGACAAAGAAGGCGAAGACCG CGCTCACTACCTGATGACCCGTTTGGGCGAGCTGGCCACCCGTAGTGGTTCGCAGCTGCCGTACGCCATCACCACGCCAT ATCGCAACACCATTCCTGTCACCCACGAAGCACGCATGCCTGGCGACCTGTTCATGGAACGCCGCATTCGCTCGCTGGTG CGCTGGAACGCATTGGCCATGGTTGTCAAAACCAACATCGGCGACCCGGATCTGGGCGGCCACATCTCCAGCTTCGCCTC CAGCGCCACGCTGTACGACATCGGCTTCAACTACTTCTTCCAGGCCCCGACCGACGAACACGGCGGCGACCTGATCTACT TCCAGGGTCACGCATCGCCAGGCGTTTACGCCCGTGCGTTCATGGAAGGCCGCATCACCGAAGAGCAAATGACCAACTTC CGTCAGGAAGTCGACGGCAATGGCCTGTCTTCTTACCCACACCCGTGGCTGATGAAGGATTTCTGGCAGTTCCCGACTGT ATCGATGGGCCTTGGCCCGATCCAGGCGATCTACCAGGCGCGCTTCATGAAGTACCTGGAACACCGCGGTTACATCCCGG AAGGCAAGCAGAAAGTCTGGTGCTTCCTGGGTGACGGCGAGACCGACGAGCCGGAATCCCTGGGCGCCATCGCCCTGGCC GGTCGCGAGAAGCTCGACAACCTGATCTTCGTCGTCAACTGCAACCTGCAGCGCCTCGACGGCCCGGTTCGCGGCAACGC CAAGATCATCCAGGAACTCGAAGGCGTGTTCCGTGGCGCTCAATGGAACGTCACCAAAGTCATCTGGGGCCGTTTCTGGG ACCCACTGCTGGCCAAGGACGTCGACGGTATCCTGCAACGTCGCATGGACGAAGTCATCGACGGCGAATACCAGAACTAC AAGGCCAAGGACGGCGCGTTCGTCCGCGAGCACTTCTTCAACTCGCCTGAACTCAAGGCCATGGTTGCCGATCTGTCCGA CGACGAGATCTGGAAACTCAACCGTGGCGGCCACGACCCGTACAAGGTCTATGCGGCCTACCACGAAGCCGTCAACCACA AGGGTCAACCGACCGTGGTTCTGGCCAAGACCATCAAGGGTTATGGCACCGGCGCCGGTGAAGCGAAAAACACTGCGCAC AACACCAAAAAGGTCGATGTCGACAGCCTGCGTCACTTCCGTGACCGCTTCGACATCCCGGTCAAGGACTCCGAACTCGA AGCCCTGCCGTTCTACAAGCCGGAAGAAGGCAGCGCCGAAGCCCGTTACCTGAGCGAGCGTCGTGCTGCGCTGGGTGGTT TCGTGCCGCAGCGTCGTGCGCAGAGCTTCAGCCTGCCGACCCCGCCACTCGAGACCCTCAAGGCCATCCTGGATGGCTCG GGCGATCGCGAAATCTCCACCACCATGGCCTTCGTGCGCATCCTGACGCAACTGGTCAAGGACAAGGAAATCGGTCAGCG CATCGTGCCGATCATCCCGGACGAAGCGCGTACCTTCGGTATGGAAGGCATGTTCCGCCAACTGGGCATCTACTCGTCGG TCGGCCAGCTCTACGAGCCAGTCGATAAAGAACAGGTGATGTTCTATCGCGAAGACAAGAAAGGCCAGATCCTCGAAGAA GGCATCAACGAAGCGGGCGCCATGTCCTCCTTCATCGCTGCCGGTACTTCGTATTCCAGCCACAACCAGCCGATGATTCC GTTCTACATCTTCTACTCGATGTTCGGTTTCCAGCGTATCGGCGACCTGGCCTGGGCCGCTGGCGACAGCCGTACCCGTG GCTTCCTGATTGGCGGCACCGCCGGCCGTACCACGCTGAACGGTGAAGGCCTGCAGCACGAAGACGGTCACAGCCACATC CTGGCATCGACCATCCCGAACTGCCGCACCTTCGACCCGACTTACGGTTATGAACTGGCAGTGATCATCCAGGACGGCAT GCGCCGGATGTTCGAAGAGCAGCAGGACGTTTTCTACTACCTGACCGTGATGAACGAGTCCTACGCCCAGCCAGCCATGC CGGCCGGTGTGGAAGAAGGCATCGTCAAGGGCATGTACCTGCTCGAAGAAGACACCAAGGAAGCGGCGCACCACGTCCAG TTGCTGGGCTCGGGCACCATCCTGCGTGAAGTCCGCGAAGCGGCGAAGATTCTCCGTGACGAGTTCAACATCGGTGCCGA CGTGTGGAGCGTCACCAGCTTCAACGAGCTGCGTCGCGACGGTCTGGCTGCAGAGCGCAACAACCGCCTGCACCCTGGCC AGAAGCCGCAGCTGAGCTATGTCGAGGAATGCCTGAACGGTCGCAAAGGTCCGGTCATCGCATCGACGGATTACATGAAG CTGTTCGCTGATCAGATTCGTCAGTGGGTTCCAACCAAGGAATACAAAGTCCTGGGCACCGACGGTTTCGGCCGTAGCGA CAGCCGCAAGAAGCTGCGTCACTTCTTTGAAGTCGATCGTCACTTCGTGGTGCTGGCAGCCCTGGAAGCCTTGGCTGATC GTGGCGATATCGAACCTAAAGTCGTGGCGGAAGCCATCGCCAAGTTCGGTATCGATCCTGAAAAACGCAATCCACTGGAC TGTTAA
Upstream 100 bases:
>100_bases CCCACCCTCCGGAAATCCAAGAATTTATGTCGTCTGCCCACAAGGCCAGTCGCAAACTCAGGCAACCGATTCTGGAAGCC TTTCCGCCCTGGAGCAAGCC
Downstream 100 bases:
>100_bases GAGTCTGCTTCAAGAGCGCTGATCAGAGCGTAAACAGCCGAGGATGCGGAATTTACTCGACGTAAATGAGCATCCAACGC TGTTTCGTTGTAACTGAACC
Product: pyruvate dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 881; Mature: 881
Protein sequence:
>881_residues MQDLDPVETQEWLDALESVLDKEGEDRAHYLMTRLGELATRSGSQLPYAITTPYRNTIPVTHEARMPGDLFMERRIRSLV RWNALAMVVKTNIGDPDLGGHISSFASSATLYDIGFNYFFQAPTDEHGGDLIYFQGHASPGVYARAFMEGRITEEQMTNF RQEVDGNGLSSYPHPWLMKDFWQFPTVSMGLGPIQAIYQARFMKYLEHRGYIPEGKQKVWCFLGDGETDEPESLGAIALA GREKLDNLIFVVNCNLQRLDGPVRGNAKIIQELEGVFRGAQWNVTKVIWGRFWDPLLAKDVDGILQRRMDEVIDGEYQNY KAKDGAFVREHFFNSPELKAMVADLSDDEIWKLNRGGHDPYKVYAAYHEAVNHKGQPTVVLAKTIKGYGTGAGEAKNTAH NTKKVDVDSLRHFRDRFDIPVKDSELEALPFYKPEEGSAEARYLSERRAALGGFVPQRRAQSFSLPTPPLETLKAILDGS GDREISTTMAFVRILTQLVKDKEIGQRIVPIIPDEARTFGMEGMFRQLGIYSSVGQLYEPVDKEQVMFYREDKKGQILEE GINEAGAMSSFIAAGTSYSSHNQPMIPFYIFYSMFGFQRIGDLAWAAGDSRTRGFLIGGTAGRTTLNGEGLQHEDGHSHI LASTIPNCRTFDPTYGYELAVIIQDGMRRMFEEQQDVFYYLTVMNESYAQPAMPAGVEEGIVKGMYLLEEDTKEAAHHVQ LLGSGTILREVREAAKILRDEFNIGADVWSVTSFNELRRDGLAAERNNRLHPGQKPQLSYVEECLNGRKGPVIASTDYMK LFADQIRQWVPTKEYKVLGTDGFGRSDSRKKLRHFFEVDRHFVVLAALEALADRGDIEPKVVAEAIAKFGIDPEKRNPLD C
Sequences:
>Translated_881_residues MQDLDPVETQEWLDALESVLDKEGEDRAHYLMTRLGELATRSGSQLPYAITTPYRNTIPVTHEARMPGDLFMERRIRSLV RWNALAMVVKTNIGDPDLGGHISSFASSATLYDIGFNYFFQAPTDEHGGDLIYFQGHASPGVYARAFMEGRITEEQMTNF RQEVDGNGLSSYPHPWLMKDFWQFPTVSMGLGPIQAIYQARFMKYLEHRGYIPEGKQKVWCFLGDGETDEPESLGAIALA GREKLDNLIFVVNCNLQRLDGPVRGNAKIIQELEGVFRGAQWNVTKVIWGRFWDPLLAKDVDGILQRRMDEVIDGEYQNY KAKDGAFVREHFFNSPELKAMVADLSDDEIWKLNRGGHDPYKVYAAYHEAVNHKGQPTVVLAKTIKGYGTGAGEAKNTAH NTKKVDVDSLRHFRDRFDIPVKDSELEALPFYKPEEGSAEARYLSERRAALGGFVPQRRAQSFSLPTPPLETLKAILDGS GDREISTTMAFVRILTQLVKDKEIGQRIVPIIPDEARTFGMEGMFRQLGIYSSVGQLYEPVDKEQVMFYREDKKGQILEE GINEAGAMSSFIAAGTSYSSHNQPMIPFYIFYSMFGFQRIGDLAWAAGDSRTRGFLIGGTAGRTTLNGEGLQHEDGHSHI LASTIPNCRTFDPTYGYELAVIIQDGMRRMFEEQQDVFYYLTVMNESYAQPAMPAGVEEGIVKGMYLLEEDTKEAAHHVQ LLGSGTILREVREAAKILRDEFNIGADVWSVTSFNELRRDGLAAERNNRLHPGQKPQLSYVEECLNGRKGPVIASTDYMK LFADQIRQWVPTKEYKVLGTDGFGRSDSRKKLRHFFEVDRHFVVLAALEALADRGDIEPKVVAEAIAKFGIDPEKRNPLD C >Mature_881_residues MQDLDPVETQEWLDALESVLDKEGEDRAHYLMTRLGELATRSGSQLPYAITTPYRNTIPVTHEARMPGDLFMERRIRSLV RWNALAMVVKTNIGDPDLGGHISSFASSATLYDIGFNYFFQAPTDEHGGDLIYFQGHASPGVYARAFMEGRITEEQMTNF RQEVDGNGLSSYPHPWLMKDFWQFPTVSMGLGPIQAIYQARFMKYLEHRGYIPEGKQKVWCFLGDGETDEPESLGAIALA GREKLDNLIFVVNCNLQRLDGPVRGNAKIIQELEGVFRGAQWNVTKVIWGRFWDPLLAKDVDGILQRRMDEVIDGEYQNY KAKDGAFVREHFFNSPELKAMVADLSDDEIWKLNRGGHDPYKVYAAYHEAVNHKGQPTVVLAKTIKGYGTGAGEAKNTAH NTKKVDVDSLRHFRDRFDIPVKDSELEALPFYKPEEGSAEARYLSERRAALGGFVPQRRAQSFSLPTPPLETLKAILDGS GDREISTTMAFVRILTQLVKDKEIGQRIVPIIPDEARTFGMEGMFRQLGIYSSVGQLYEPVDKEQVMFYREDKKGQILEE GINEAGAMSSFIAAGTSYSSHNQPMIPFYIFYSMFGFQRIGDLAWAAGDSRTRGFLIGGTAGRTTLNGEGLQHEDGHSHI LASTIPNCRTFDPTYGYELAVIIQDGMRRMFEEQQDVFYYLTVMNESYAQPAMPAGVEEGIVKGMYLLEEDTKEAAHHVQ LLGSGTILREVREAAKILRDEFNIGADVWSVTSFNELRRDGLAAERNNRLHPGQKPQLSYVEECLNGRKGPVIASTDYMK LFADQIRQWVPTKEYKVLGTDGFGRSDSRKKLRHFFEVDRHFVVLAALEALADRGDIEPKVVAEAIAKFGIDPEKRNPLD C
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=882, Percent_Identity=60.8843537414966, Blast_Score=1109, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 99305; Mature: 99305
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDLDPVETQEWLDALESVLDKEGEDRAHYLMTRLGELATRSGSQLPYAITTPYRNTIPV CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC THEARMPGDLFMERRIRSLVRWNALAMVVKTNIGDPDLGGHISSFASSATLYDIGFNYFF CCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHCCCEEEEECCEEEE QAPTDEHGGDLIYFQGHASPGVYARAFMEGRITEEQMTNFRQEVDGNGLSSYPHPWLMKD ECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH FWQFPTVSMGLGPIQAIYQARFMKYLEHRGYIPEGKQKVWCFLGDGETDEPESLGAIALA HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHCCCEEEC GREKLDNLIFVVNCNLQRLDGPVRGNAKIIQELEGVFRGAQWNVTKVIWGRFWDPLLAKD CHHHHCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH VDGILQRRMDEVIDGEYQNYKAKDGAFVREHFFNSPELKAMVADLSDDEIWKLNRGGHDP HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHCCCCCCEEECCCCCCCH YKVYAAYHEAVNHKGQPTVVLAKTIKGYGTGAGEAKNTAHNTKKVDVDSLRHFRDRFDIP HHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC VKDSELEALPFYKPEEGSAEARYLSERRAALGGFVPQRRAQSFSLPTPPLETLKAILDGS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHCCC GDREISTTMAFVRILTQLVKDKEIGQRIVPIIPDEARTFGMEGMFRQLGIYSSVGQLYEP CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHCC VDKEQVMFYREDKKGQILEEGINEAGAMSSFIAAGTSYSSHNQPMIPFYIFYSMFGFQRI CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH GDLAWAAGDSRTRGFLIGGTAGRTTLNGEGLQHEDGHSHILASTIPNCRTFDPTYGYELA HHHHHCCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCEEHHHCCCCCCCCCCCCCCEEE VIIQDGMRRMFEEQQDVFYYLTVMNESYAQPAMPAGVEEGIVKGMYLLEEDTKEAAHHVQ EHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LLGSGTILREVREAAKILRDEFNIGADVWSVTSFNELRRDGLAAERNNRLHPGQKPQLSY HHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHCCCCHHCCCCCCCCCCCCHHH VEECLNGRKGPVIASTDYMKLFADQIRQWVPTKEYKVLGTDGFGRSDSRKKLRHFFEVDR HHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH HFVVLAALEALADRGDIEPKVVAEAIAKFGIDPEKRNPLDC HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MQDLDPVETQEWLDALESVLDKEGEDRAHYLMTRLGELATRSGSQLPYAITTPYRNTIPV CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC THEARMPGDLFMERRIRSLVRWNALAMVVKTNIGDPDLGGHISSFASSATLYDIGFNYFF CCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHCCCEEEEECCEEEE QAPTDEHGGDLIYFQGHASPGVYARAFMEGRITEEQMTNFRQEVDGNGLSSYPHPWLMKD ECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH FWQFPTVSMGLGPIQAIYQARFMKYLEHRGYIPEGKQKVWCFLGDGETDEPESLGAIALA HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHCCCEEEC GREKLDNLIFVVNCNLQRLDGPVRGNAKIIQELEGVFRGAQWNVTKVIWGRFWDPLLAKD CHHHHCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH VDGILQRRMDEVIDGEYQNYKAKDGAFVREHFFNSPELKAMVADLSDDEIWKLNRGGHDP HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHCCCCCCEEECCCCCCCH YKVYAAYHEAVNHKGQPTVVLAKTIKGYGTGAGEAKNTAHNTKKVDVDSLRHFRDRFDIP HHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC VKDSELEALPFYKPEEGSAEARYLSERRAALGGFVPQRRAQSFSLPTPPLETLKAILDGS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHCCC GDREISTTMAFVRILTQLVKDKEIGQRIVPIIPDEARTFGMEGMFRQLGIYSSVGQLYEP CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHCC VDKEQVMFYREDKKGQILEEGINEAGAMSSFIAAGTSYSSHNQPMIPFYIFYSMFGFQRI CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH GDLAWAAGDSRTRGFLIGGTAGRTTLNGEGLQHEDGHSHILASTIPNCRTFDPTYGYELA HHHHHCCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCEEHHHCCCCCCCCCCCCCCEEE VIIQDGMRRMFEEQQDVFYYLTVMNESYAQPAMPAGVEEGIVKGMYLLEEDTKEAAHHVQ EHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LLGSGTILREVREAAKILRDEFNIGADVWSVTSFNELRRDGLAAERNNRLHPGQKPQLSY HHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHCCCCHHCCCCCCCCCCCCHHH VEECLNGRKGPVIASTDYMKLFADQIRQWVPTKEYKVLGTDGFGRSDSRKKLRHFFEVDR HHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH HFVVLAALEALADRGDIEPKVVAEAIAKFGIDPEKRNPLDC HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9171401; 10984043 [H]