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The map label for this gene is soxC [H]

Identifier: 66043623

GI number: 66043623

Start: 378980

End: 380302

Strand: Reverse

Name: soxC [H]

Synonym: Psyr_0354

Alternate gene names: 66043623

Gene position: 380302-378980 (Counterclockwise)

Preceding gene: 66043624

Following gene: 66043622

Centisome position: 6.24

GC content: 63.34

Gene sequence:

>1323_bases
ATGGTCCCTTTCACAACTATCCCTGTGGATAAACCCAGGGTCGTATCGATTGACGGTGAGCGACGCGAGTCTGATCCGGC
GACGGTAGCGGCCCACAGCGTCGAGGCTCCACAAGAGCCTGACGTTGCCCCCCGCCTGCTGAAGGCCAGCGTGTTGCAAA
ACGACGCGCAAGCCATTGCAGCAGCCCATGAACTGGCCGCGGCCGCGCAGGTCAACGCCGCCAATCGCGACAGACAACGC
GCCTTGCCATGGGCTGAAATCGAACAGTTCACCCGTAGCGGACTGGGCAGTATTTCCATCCCGCGCGCGTACGGCGGCCC
GCAAGTATCGTTCGTCACGGTAGCCGAAGTTTTCAGGATCATTTCTGCTGCCGATCCGGCACTGGGACAAATTCCGCAAA
ACCAGTTCGGCATTCTGCACCTGCTGCAGAGCAGCGCCACCGAGCAGCAGAAGAAAGCGCTGTTCCAGAGCGTGCTGGAC
GGTTGGCGCATCGGCAATGCAGGCCCTGAGCGTGGCACCAAAAACACCCTGGAACTCAAGGCGCGGATCACCGCCAATGG
CGACCGCCTGGCCATTACCGGACAGAAGTTCTATTCCACCGGCGCGCTGTTCGCGCATTGGGTCGCAGTCAAGGCGCTGG
ATGATCAGGGCCGGCAGATCATGGCCTTCATCGAGCGCGGCACACCGGGCCTGCGCATCGTTGATGACTGGTCGGGCTTT
GGCCAGCGCACAACCGCCAGCGGCACGGTGCTGCTCGACAACGTGCCGGTGGACGCCGGGCTGGTGGTCGATAACTGGCG
CCTGTCCCTGACGCCGAACATTCAGGGCGCCGTTTCGCAACTGATCCAGGCCGCAATCGACGCGGGTATTGCGCGCGGCG
CCATCGACGATGCGATTGCCTTTGTACGCGAGAAATCCCGCCCGTGGGTCGACGCCAATGTCGAGCGCGCTAGCGATGAC
CTCTACGTGATTGCCGACATCGGCAAGCTGAAACTCGAACTGCACGCGGCAGAAGCGCTGCTGCGCAAGGCGGGTCAGGA
GCTCGACGAGATCAGCGCTGCGCCCATCGATGAACACTCGGCAGCCCGCGCCTCCATCGCGGTCGCGCGGGCCAAGGTAC
TGACCACCGAAATCTCGCTGCTGGCCAGCGAGAAGCTGTTCGAACTGGCCGGCAGCCGCGCGACCCTGGCCGAGTTCAAT
CTCGACCGCCACTGGCGCAACGCGCGCGTCCATACCCTGCATGACCCGGTGCGCTGGAAATACCACGCGGTCGGCACCTG
GCATTTGAACGGCACCCTGCCTGCTCGCCATTCCTGGATCTGA

Upstream 100 bases:

>100_bases
TTAAAAACTTTTATACACGCTTAGGGTATATACACCGGACCACCGGACATCGTGATGTTTTCCAGCCGCACCTGATGCGG
CCTACTGCTACGAGGTTCCG

Downstream 100 bases:

>100_bases
ACCAGACCACTGGAGAACACCCTTCATGAGTTCCAACCCGAAAGCGCGCGTCAACGCAGCGTTGATCACCAGTGACGCTC
AGGCCCTGCACATAGCCCGC

Product: Acyl-CoA dehydrogenase, C-terminal

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MVPFTTIPVDKPRVVSIDGERRESDPATVAAHSVEAPQEPDVAPRLLKASVLQNDAQAIAAAHELAAAAQVNAANRDRQR
ALPWAEIEQFTRSGLGSISIPRAYGGPQVSFVTVAEVFRIISAADPALGQIPQNQFGILHLLQSSATEQQKKALFQSVLD
GWRIGNAGPERGTKNTLELKARITANGDRLAITGQKFYSTGALFAHWVAVKALDDQGRQIMAFIERGTPGLRIVDDWSGF
GQRTTASGTVLLDNVPVDAGLVVDNWRLSLTPNIQGAVSQLIQAAIDAGIARGAIDDAIAFVREKSRPWVDANVERASDD
LYVIADIGKLKLELHAAEALLRKAGQELDEISAAPIDEHSAARASIAVARAKVLTTEISLLASEKLFELAGSRATLAEFN
LDRHWRNARVHTLHDPVRWKYHAVGTWHLNGTLPARHSWI

Sequences:

>Translated_440_residues
MVPFTTIPVDKPRVVSIDGERRESDPATVAAHSVEAPQEPDVAPRLLKASVLQNDAQAIAAAHELAAAAQVNAANRDRQR
ALPWAEIEQFTRSGLGSISIPRAYGGPQVSFVTVAEVFRIISAADPALGQIPQNQFGILHLLQSSATEQQKKALFQSVLD
GWRIGNAGPERGTKNTLELKARITANGDRLAITGQKFYSTGALFAHWVAVKALDDQGRQIMAFIERGTPGLRIVDDWSGF
GQRTTASGTVLLDNVPVDAGLVVDNWRLSLTPNIQGAVSQLIQAAIDAGIARGAIDDAIAFVREKSRPWVDANVERASDD
LYVIADIGKLKLELHAAEALLRKAGQELDEISAAPIDEHSAARASIAVARAKVLTTEISLLASEKLFELAGSRATLAEFN
LDRHWRNARVHTLHDPVRWKYHAVGTWHLNGTLPARHSWI
>Mature_440_residues
MVPFTTIPVDKPRVVSIDGERRESDPATVAAHSVEAPQEPDVAPRLLKASVLQNDAQAIAAAHELAAAAQVNAANRDRQR
ALPWAEIEQFTRSGLGSISIPRAYGGPQVSFVTVAEVFRIISAADPALGQIPQNQFGILHLLQSSATEQQKKALFQSVLD
GWRIGNAGPERGTKNTLELKARITANGDRLAITGQKFYSTGALFAHWVAVKALDDQGRQIMAFIERGTPGLRIVDDWSGF
GQRTTASGTVLLDNVPVDAGLVVDNWRLSLTPNIQGAVSQLIQAAIDAGIARGAIDDAIAFVREKSRPWVDANVERASDD
LYVIADIGKLKLELHAAEALLRKAGQELDEISAAPIDEHSAARASIAVARAKVLTTEISLLASEKLFELAGSRATLAEFN
LDRHWRNARVHTLHDPVRWKYHAVGTWHLNGTLPARHSWI

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17508101, Length=339, Percent_Identity=23.598820058997, Blast_Score=75, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 47709; Mature: 47709

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPFTTIPVDKPRVVSIDGERRESDPATVAAHSVEAPQEPDVAPRLLKASVLQNDAQAIA
CCCCEECCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
AAHELAAAAQVNAANRDRQRALPWAEIEQFTRSGLGSISIPRAYGGPQVSFVTVAEVFRI
HHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEHHHHHHHHH
ISAADPALGQIPQNQFGILHLLQSSATEQQKKALFQSVLDGWRIGNAGPERGTKNTLELK
HHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE
ARITANGDRLAITGQKFYSTGALFAHWVAVKALDDQGRQIMAFIERGTPGLRIVDDWSGF
EEEECCCCEEEEECHHHHHCHHHHHHHHHHEECCCCCCEEEHHHHCCCCCCEEEECCCCC
GQRTTASGTVLLDNVPVDAGLVVDNWRLSLTPNIQGAVSQLIQAAIDAGIARGAIDDAIA
CCCCCCCCEEEEECCCCCCCEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
FVREKSRPWVDANVERASDDLYVIADIGKLKLELHAAEALLRKAGQELDEISAAPIDEHS
HHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEHHHHHHHHHHHCCHHHHHCCCCCCCCH
AARASIAVARAKVLTTEISLLASEKLFELAGSRATLAEFNLDRHWRNARVHTLHDPVRWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHCCCEEEEECCCCCEE
YHAVGTWHLNGTLPARHSWI
EEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MVPFTTIPVDKPRVVSIDGERRESDPATVAAHSVEAPQEPDVAPRLLKASVLQNDAQAIA
CCCCEECCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
AAHELAAAAQVNAANRDRQRALPWAEIEQFTRSGLGSISIPRAYGGPQVSFVTVAEVFRI
HHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEHHHHHHHHH
ISAADPALGQIPQNQFGILHLLQSSATEQQKKALFQSVLDGWRIGNAGPERGTKNTLELK
HHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE
ARITANGDRLAITGQKFYSTGALFAHWVAVKALDDQGRQIMAFIERGTPGLRIVDDWSGF
EEEECCCCEEEEECHHHHHCHHHHHHHHHHEECCCCCCEEEHHHHCCCCCCEEEECCCCC
GQRTTASGTVLLDNVPVDAGLVVDNWRLSLTPNIQGAVSQLIQAAIDAGIARGAIDDAIA
CCCCCCCCEEEEECCCCCCCEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
FVREKSRPWVDANVERASDDLYVIADIGKLKLELHAAEALLRKAGQELDEISAAPIDEHS
HHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEHHHHHHHHHHHCCHHHHHCCCCCCCCH
AARASIAVARAKVLTTEISLLASEKLFELAGSRATLAEFNLDRHWRNARVHTLHDPVRWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHCCCEEEEECCCCCEE
YHAVGTWHLNGTLPARHSWI
EEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]