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The map label for this gene is soxC [H]

Identifier: 66043622

GI number: 66043622

Start: 377749

End: 378954

Strand: Reverse

Name: soxC [H]

Synonym: Psyr_0353

Alternate gene names: 66043622

Gene position: 378954-377749 (Counterclockwise)

Preceding gene: 66043623

Following gene: 66043621

Centisome position: 6.22

GC content: 63.35

Gene sequence:

>1206_bases
ATGAGTTCCAACCCGAAAGCGCGCGTCAACGCAGCGTTGATCACCAGTGACGCTCAGGCCCTGCACATAGCCCGCGAACT
GGCCCTGCAATTGAAAACCGACAGCGCGCAACGCGATCGCGAGCGCCGTTTGCCGCATGCCGAACTCGACCTGTTCAGCC
AGTCCGGTCTGTGGGGCATCAGTGTGCCGCAAGCGTTCGGCGGCGCAGGTGTTTCCAATGTCACCCTGGCCAAGGTGATC
CAGCTGATTTCCGAAGCCGATGGCTCGCTGGGCCAGATTCCACAAAACCATTTTTACGCTCTGGAAGTGCTGCGTGTGAA
CGGCAGTCCGCAGCAACAGGCGCGCTTGTACGCCGAGGCACTGGCGGGCGTACGCTTCGGCAATGCGCTGGCCGAACTGG
GGACCAGAACCGCACATGACCGCACCACTCGCCTGAGCCGCGACGGGGACGGTTATCGCATCAACGGCCGCAAGTTCTAC
GCCACCGGCGCGCTGTATGCGCAACGTATCCCCACCTCGGTGATTGACGATGAAGGTGTGCAGCAACTGGTGTTCGTGGC
GCACGACAGCGAGGGGCTGAGCGTCATCGACGACTGGAGCGGTTTCGGGCAGCGCACCACCGGCAGTGGCTCGGTGGTGT
TCGACAATGTGTATGTCAGCGCCAACGATGTGGTGCCGTTCCAGAGCGCCTTCCAGCGCCCTACCACGGTCGGGCCACTG
GCGCAGATTCTCCACGCTGCGATCGACACCGGCATTGCCCGAGCGGCCTTCGAGGACGCCCTGACGTTCGTGCAGACGCG
TACCCGGCCATGGATCGATTCGGGTATCGAAAAGGCCGTGGACGACCCGCTGACCCTGCACAGCTTCGGCAAGCTGGGTA
TTCGCCTGCATGCCGCCGAAGCACTGCTCGAACGCGCCGGGGAATTTCTGGATGTCGCTCAGGCCGACAGCAATGCCGAG
ACCGTCGCCGCCGCCTCGATAGCCGTGGCCGAAGCGCGCGCCATCAGCACGGAGATTTCCCTGGCAGCCGGCAGCACGCT
GTTCGAGCTGGCGGGCAGTCAATCCACACTGGCGGAACACGGCCTGGATCGCCACTGGCGCAATGCGCGCGTGCATACGC
TGCATGACCCGGTGCGCTGGAAGTTTCACGCCATCGGCAATTACTACCTCAATGAGACTAATCCGCCCCTGCGGGGAACG
ATCTGA

Upstream 100 bases:

>100_bases
GTGCGCTGGAAATACCACGCGGTCGGCACCTGGCATTTGAACGGCACCCTGCCTGCTCGCCATTCCTGGATCTGAACCAG
ACCACTGGAGAACACCCTTC

Downstream 100 bases:

>100_bases
TGGCGCGTAAAAAGATCCTCCTCAATGCGTTCAACATGAACTGCATCGGCCATATCAACCATGGCCTGTGGACCCATCCA
CGCGACACCTCGACACAATT

Product: Acyl-CoA dehydrogenase, C-terminal

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSSNPKARVNAALITSDAQALHIARELALQLKTDSAQRDRERRLPHAELDLFSQSGLWGISVPQAFGGAGVSNVTLAKVI
QLISEADGSLGQIPQNHFYALEVLRVNGSPQQQARLYAEALAGVRFGNALAELGTRTAHDRTTRLSRDGDGYRINGRKFY
ATGALYAQRIPTSVIDDEGVQQLVFVAHDSEGLSVIDDWSGFGQRTTGSGSVVFDNVYVSANDVVPFQSAFQRPTTVGPL
AQILHAAIDTGIARAAFEDALTFVQTRTRPWIDSGIEKAVDDPLTLHSFGKLGIRLHAAEALLERAGEFLDVAQADSNAE
TVAAASIAVAEARAISTEISLAAGSTLFELAGSQSTLAEHGLDRHWRNARVHTLHDPVRWKFHAIGNYYLNETNPPLRGT
I

Sequences:

>Translated_401_residues
MSSNPKARVNAALITSDAQALHIARELALQLKTDSAQRDRERRLPHAELDLFSQSGLWGISVPQAFGGAGVSNVTLAKVI
QLISEADGSLGQIPQNHFYALEVLRVNGSPQQQARLYAEALAGVRFGNALAELGTRTAHDRTTRLSRDGDGYRINGRKFY
ATGALYAQRIPTSVIDDEGVQQLVFVAHDSEGLSVIDDWSGFGQRTTGSGSVVFDNVYVSANDVVPFQSAFQRPTTVGPL
AQILHAAIDTGIARAAFEDALTFVQTRTRPWIDSGIEKAVDDPLTLHSFGKLGIRLHAAEALLERAGEFLDVAQADSNAE
TVAAASIAVAEARAISTEISLAAGSTLFELAGSQSTLAEHGLDRHWRNARVHTLHDPVRWKFHAIGNYYLNETNPPLRGT
I
>Mature_400_residues
SSNPKARVNAALITSDAQALHIARELALQLKTDSAQRDRERRLPHAELDLFSQSGLWGISVPQAFGGAGVSNVTLAKVIQ
LISEADGSLGQIPQNHFYALEVLRVNGSPQQQARLYAEALAGVRFGNALAELGTRTAHDRTTRLSRDGDGYRINGRKFYA
TGALYAQRIPTSVIDDEGVQQLVFVAHDSEGLSVIDDWSGFGQRTTGSGSVVFDNVYVSANDVVPFQSAFQRPTTVGPLA
QILHAAIDTGIARAAFEDALTFVQTRTRPWIDSGIEKAVDDPLTLHSFGKLGIRLHAAEALLERAGEFLDVAQADSNAET
VAAASIAVAEARAISTEISLAAGSTLFELAGSQSTLAEHGLDRHWRNARVHTLHDPVRWKFHAIGNYYLNETNPPLRGTI

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4557233, Length=375, Percent_Identity=24.2666666666667, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI4501859, Length=350, Percent_Identity=23.1428571428571, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508101, Length=396, Percent_Identity=21.7171717171717, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 43310; Mature: 43179

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNPKARVNAALITSDAQALHIARELALQLKTDSAQRDRERRLPHAELDLFSQSGLWGI
CCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCCCCCEE
SVPQAFGGAGVSNVTLAKVIQLISEADGSLGQIPQNHFYALEVLRVNGSPQQQARLYAEA
ECCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHH
LAGVRFGNALAELGTRTAHDRTTRLSRDGDGYRINGRKFYATGALYAQRIPTSVIDDEGV
HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEECCEEEEEEHHHHHHHCCCHHCCCCCC
QQLVFVAHDSEGLSVIDDWSGFGQRTTGSGSVVFDNVYVSANDVVPFQSAFQRPTTVGPL
EEEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCHHHH
AQILHAAIDTGIARAAFEDALTFVQTRTRPWIDSGIEKAVDDPLTLHSFGKLGIRLHAAE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEHHHHCCCCEEEHHHH
ALLERAGEFLDVAQADSNAETVAAASIAVAEARAISTEISLAAGSTLFELAGSQSTLAEH
HHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEHHCCCHHHHHCCCCHHHHHH
GLDRHWRNARVHTLHDPVRWKFHAIGNYYLNETNPPLRGTI
CCHHHHCCCCEEEECCCCEEEEEEECCEEECCCCCCCCCCC
>Mature Secondary Structure 
SSNPKARVNAALITSDAQALHIARELALQLKTDSAQRDRERRLPHAELDLFSQSGLWGI
CCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCCCCCEE
SVPQAFGGAGVSNVTLAKVIQLISEADGSLGQIPQNHFYALEVLRVNGSPQQQARLYAEA
ECCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHH
LAGVRFGNALAELGTRTAHDRTTRLSRDGDGYRINGRKFYATGALYAQRIPTSVIDDEGV
HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEECCEEEEEEHHHHHHHCCCHHCCCCCC
QQLVFVAHDSEGLSVIDDWSGFGQRTTGSGSVVFDNVYVSANDVVPFQSAFQRPTTVGPL
EEEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCHHHH
AQILHAAIDTGIARAAFEDALTFVQTRTRPWIDSGIEKAVDDPLTLHSFGKLGIRLHAAE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEHHHHCCCCEEEHHHH
ALLERAGEFLDVAQADSNAETVAAASIAVAEARAISTEISLAAGSTLFELAGSQSTLAEH
HHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEHHCCCHHHHHCCCCHHHHHH
GLDRHWRNARVHTLHDPVRWKFHAIGNYYLNETNPPLRGTI
CCHHHHCCCCEEEECCCCEEEEEEECCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]