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The map label for this gene is ubiD [H]

Identifier: 66043572

GI number: 66043572

Start: 321695

End: 323173

Strand: Direct

Name: ubiD [H]

Synonym: Psyr_0302

Alternate gene names: 66043572

Gene position: 321695-323173 (Clockwise)

Preceding gene: 66043571

Following gene: 66043573

Centisome position: 5.28

GC content: 60.92

Gene sequence:

>1479_bases
ATGGCCGGGTTAATGAAATTCAAAGATCTTAGGGATTTCGTGCAGCAGCTTGAGCAGCGCGGAGAGTTGAAACGCATCCA
GATGCCGATCTCGCCTGTGCTGGAAATGACTGAAATCTGTGACCGTACCTTGCGTGCCAAGGGCCCGGCGCTGTTATTCG
AAAAACCGGTCGGTTTTGATATCCCGGTGCTGGGCAACCTGTTCGGCACGCCAGAGCGCGTAGCCATGGGCATGGGCGCC
GAAGCGGTCAGTGAGCTGCGTGAAATCGGCAAGCTGCTGGCGTTCCTCAAAGAGCCCGAGCCACCCAAGGGCCTGAAGGA
TGCGTGGTCCAAGCTGCCGATCTTCCGCAAGGTCATCGCCATGGCGCCAAAGGTCGTCAAGGATGCGCCCTGCCAGGAGG
TCGTCATCGAAGGCGATGACGTCGACCTCGGCATGCTGCCTGTACAGACCTGCTGGCCGGGCGATGTCGCGCCGCTGATC
ACCTGGGGCCTGACGGTCACCAAAGGCCCGAACAAGGAGCGCCAGAACCTCGGCATCTATCGCCAGCAGGTCATTGGCCG
CAACAAGATCATCATGCGCTGGCTCAGCCATCGCGGCGGCGCGCTGGACTTCCGCGACTGGTGCGTCAAGCATCCTGGCG
AGCCTTATCCGGTGGCCGTCGCGCTGGGCGCGGACCCGGCAACCATTCTCGGCGCCGTGACGCCGGTACCGGACAGTCTG
TCCGAATATGCCTTTGCCGGGCTGCTGCGGGGCTCGCGCACCGAACTGATCAAGTGCCGTGGCAGCAATCTGCAAGTTCC
GGCCAGCGCCGAGATCGTCCTCGAAGGTGTGATTCACCCGGGCGAGATGGCCGACGAGGGGCCTTACGGGGACCACACCG
GCTATTACAACGAAGTCGACAGCTTTCCGGTGCTGACCGTCGAGCGTATCACCCACCGTATCAAGCCGATCTACCACAGC
ACCTACACCGGTCGTCCACCTGATGAGCCGGCGATTCTGGGCGTCGCGCTGAACGAAGTGTTCGTGCCGATTCTGCAAAA
GCAGTTTCCGGAGATCGTCGATTTCTACCTGCCGCCCGAGGGTTGCTCGTACCGCATGGCGGTGGTGACCATCAAGAAAC
AGTATCCCGGCCATGCCAAGCGCGTGATGCTGGGTGTCTGGTCGTTCTTGCGCCAGTTCATGTACACCAAATTCGTGATC
GTCACCGACGACGATATCAATGCGCGGGACTGGAACGACGTGATCTGGGCCATCACCACGCGCATGGACCCCAAGCGCGA
CACGGTCATGATCGACAACACGCCCATCGATTACCTCGATTTCGCCTCGCCGGTGTCCGGCCTGGGATCGAAAATGGGGT
TGGATGCCACGAACAAATGGCCAGGTGAGACCAGCCGCGAGTGGGGCAGGGCGATCGTCAAGGACGAAGCCACCACACGC
CGGGTGGACGAAATCTGGACTCAGTTGGGAATAGACTGA

Upstream 100 bases:

>100_bases
AAAAAATGGTGTCCTTCGGGGCACCATTTTTTTTGCCTGCATGCCGCCGATTAGCTGCCTTGACGGGCTGGAGCAGGTAC
GATGTGCGTCTATTGGATAA

Downstream 100 bases:

>100_bases
TGCGCGTAACCTTGCAGCCATCAGGTGCGGTGCTGGAAACCCTGCCGGGCGAGCGGATACTCGATGCTGCACAGCGTCTG
GGCTACGAGTGCCCGCAGAG

Product: carboxylyase-like protein

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MAGLMKFKDLRDFVQQLEQRGELKRIQMPISPVLEMTEICDRTLRAKGPALLFEKPVGFDIPVLGNLFGTPERVAMGMGA
EAVSELREIGKLLAFLKEPEPPKGLKDAWSKLPIFRKVIAMAPKVVKDAPCQEVVIEGDDVDLGMLPVQTCWPGDVAPLI
TWGLTVTKGPNKERQNLGIYRQQVIGRNKIIMRWLSHRGGALDFRDWCVKHPGEPYPVAVALGADPATILGAVTPVPDSL
SEYAFAGLLRGSRTELIKCRGSNLQVPASAEIVLEGVIHPGEMADEGPYGDHTGYYNEVDSFPVLTVERITHRIKPIYHS
TYTGRPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRMAVVTIKKQYPGHAKRVMLGVWSFLRQFMYTKFVI
VTDDDINARDWNDVIWAITTRMDPKRDTVMIDNTPIDYLDFASPVSGLGSKMGLDATNKWPGETSREWGRAIVKDEATTR
RVDEIWTQLGID

Sequences:

>Translated_492_residues
MAGLMKFKDLRDFVQQLEQRGELKRIQMPISPVLEMTEICDRTLRAKGPALLFEKPVGFDIPVLGNLFGTPERVAMGMGA
EAVSELREIGKLLAFLKEPEPPKGLKDAWSKLPIFRKVIAMAPKVVKDAPCQEVVIEGDDVDLGMLPVQTCWPGDVAPLI
TWGLTVTKGPNKERQNLGIYRQQVIGRNKIIMRWLSHRGGALDFRDWCVKHPGEPYPVAVALGADPATILGAVTPVPDSL
SEYAFAGLLRGSRTELIKCRGSNLQVPASAEIVLEGVIHPGEMADEGPYGDHTGYYNEVDSFPVLTVERITHRIKPIYHS
TYTGRPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRMAVVTIKKQYPGHAKRVMLGVWSFLRQFMYTKFVI
VTDDDINARDWNDVIWAITTRMDPKRDTVMIDNTPIDYLDFASPVSGLGSKMGLDATNKWPGETSREWGRAIVKDEATTR
RVDEIWTQLGID
>Mature_491_residues
AGLMKFKDLRDFVQQLEQRGELKRIQMPISPVLEMTEICDRTLRAKGPALLFEKPVGFDIPVLGNLFGTPERVAMGMGAE
AVSELREIGKLLAFLKEPEPPKGLKDAWSKLPIFRKVIAMAPKVVKDAPCQEVVIEGDDVDLGMLPVQTCWPGDVAPLIT
WGLTVTKGPNKERQNLGIYRQQVIGRNKIIMRWLSHRGGALDFRDWCVKHPGEPYPVAVALGADPATILGAVTPVPDSLS
EYAFAGLLRGSRTELIKCRGSNLQVPASAEIVLEGVIHPGEMADEGPYGDHTGYYNEVDSFPVLTVERITHRIKPIYHST
YTGRPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRMAVVTIKKQYPGHAKRVMLGVWSFLRQFMYTKFVIV
TDDDINARDWNDVIWAITTRMDPKRDTVMIDNTPIDYLDFASPVSGLGSKMGLDATNKWPGETSREWGRAIVKDEATTRR
VDEIWTQLGID

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=487, Percent_Identity=77.0020533880903, Blast_Score=797, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=447, Percent_Identity=25.0559284116331, Blast_Score=119, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 54953; Mature: 54822

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLMKFKDLRDFVQQLEQRGELKRIQMPISPVLEMTEICDRTLRAKGPALLFEKPVGFD
CCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
IPVLGNLFGTPERVAMGMGAEAVSELREIGKLLAFLKEPEPPKGLKDAWSKLPIFRKVIA
CCHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHH
MAPKVVKDAPCQEVVIEGDDVDLGMLPVQTCWPGDVAPLITWGLTVTKGPNKERQNLGIY
HCCHHHHCCCCCCEEEECCCCCCCCEECCCCCCCCCHHHHHCCEEEECCCCHHHHHHHHH
RQQVIGRNKIIMRWLSHRGGALDFRDWCVKHPGEPYPVAVALGADPATILGAVTPVPDSL
HHHHHCCHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEECCCCHHHHCCCCCCCCHH
SEYAFAGLLRGSRTELIKCRGSNLQVPASAEIVLEGVIHPGEMADEGPYGDHTGYYNEVD
HHHHHHHHHCCCCCEEEEECCCCEECCCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCCC
SFPVLTVERITHRIKPIYHSTYTGRPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPE
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
GCSYRMAVVTIKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVTDDDINARDWNDVIWAITT
CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEE
RMDPKRDTVMIDNTPIDYLDFASPVSGLGSKMGLDATNKWPGETSREWGRAIVKDEATTR
CCCCCCCEEEECCCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHH
RVDEIWTQLGID
HHHHHHHHHCCC
>Mature Secondary Structure 
AGLMKFKDLRDFVQQLEQRGELKRIQMPISPVLEMTEICDRTLRAKGPALLFEKPVGFD
CCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
IPVLGNLFGTPERVAMGMGAEAVSELREIGKLLAFLKEPEPPKGLKDAWSKLPIFRKVIA
CCHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHH
MAPKVVKDAPCQEVVIEGDDVDLGMLPVQTCWPGDVAPLITWGLTVTKGPNKERQNLGIY
HCCHHHHCCCCCCEEEECCCCCCCCEECCCCCCCCCHHHHHCCEEEECCCCHHHHHHHHH
RQQVIGRNKIIMRWLSHRGGALDFRDWCVKHPGEPYPVAVALGADPATILGAVTPVPDSL
HHHHHCCHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEECCCCHHHHCCCCCCCCHH
SEYAFAGLLRGSRTELIKCRGSNLQVPASAEIVLEGVIHPGEMADEGPYGDHTGYYNEVD
HHHHHHHHHCCCCCEEEEECCCCEECCCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCCC
SFPVLTVERITHRIKPIYHSTYTGRPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPE
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
GCSYRMAVVTIKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVTDDDINARDWNDVIWAITT
CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEE
RMDPKRDTVMIDNTPIDYLDFASPVSGLGSKMGLDATNKWPGETSREWGRAIVKDEATTR
CCCCCCCEEEECCCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHH
RVDEIWTQLGID
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA