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The map label for this gene is 66043559

Identifier: 66043559

GI number: 66043559

Start: 307483

End: 308541

Strand: Reverse

Name: 66043559

Synonym: Psyr_0289

Alternate gene names: NA

Gene position: 308541-307483 (Counterclockwise)

Preceding gene: 66043560

Following gene: 66043558

Centisome position: 5.06

GC content: 61.19

Gene sequence:

>1059_bases
ATGTCCAGCCCCTATCCGGTTCGTGGCCGAGGTACTGCCAGCAATCCGCATAACCGCTTCGCACCCAGTCAGTCGGTGGC
CGAAGATGATGGCTGGTATCAGGAAGTGCCGCTTACGCAAGGCACCCAGGTCACCAGCGAAACAGCCAAAAGCATCATTA
CCCGCAACAGCTCGCCGGATATCCCCTTTGACAGGTCGATCAACCCTTACCGGGGCTGCGAGCACGGCTGCATCTATTGT
TTCGCCAGACCCAGCCACGCCTACTGGGACATGTCGCCCGGCCTGGACTTCGAGACCAGGCTGATCGCAAAGACCAACGC
GGCGGCGCTGCTCGAGCAGCAGCTGTCCAAGCCCGGCTACCGCTGCGCGCCCATTACCCTCGGGGCCAACACCGACCCCT
ACCAGCCGATCGAACGTGAGTACCGCATCACCCGGGCGACGCTTGAGGTGTTACTGCGCTATCGGCATCCGGTCAGCATC
ATTACCAAAGGCTCGCTGATCCTGCGCGATCTGGATCTGCTGGCAGAGATGGCCAGGCTACGGCTGGTGTCGGTGTTCGT
CAGCCTGACCACACTGGATGACGAACTCAAATGTATCCTCGAGCCCAGAGCTGCGGCGCCCAAGGCTCGCCTGCGGGCCA
TTCGGGTATTGCGCCAGGCGGGTGTCCCGGTCGGTGTGCTGTGTGCGCCGATGATCCCGATGATCAATGACAGCGAGCTG
GAGGCACTGCTGAGCGAAGCGAAGGCTGCAGGCGCCCTGAGCGCCAGCTACGTGATGTTGCGCCTGCCGCTGGAAGTCGC
GCCGCTGTTCGACGAGTGGCTGAAGACACATTACCCGCAACGCGCCGAGCATGTCATGAGTCTGATTCGTCAAAGTCGCG
GCGGAGCCGTGTACGACAGCACGTTTGGTTCTCGAATGCGTGGCGAAGGACCGTTTGCCGACCTGCTGGCTCAACGCTAT
GCCTTGGCAATCAAACGACTCGGATTGAACAAACGGGGTGGATTTGCACTCGATTGCGATGCGTTTTGTCCGCCGGGAGG
GCAAATGTCGCTGCTGTGA

Upstream 100 bases:

>100_bases
CACCGCCCGTCAGGCGGGCGGTGTTTTGCAGGCCGGCCATGGTGATTCATCCAGGCTTTATACTGTACTGTATGCATGAA
CAGTATATGAGTAATGCCCG

Downstream 100 bases:

>100_bases
CGAACTTGGTACTATCGTGCAAACCCGCGTCCCAGAGCCATCGCATTCAGTTTCGTTTAAGCTTCGGCGATTAGTCTGTA
ACTCGGAGTGTCATCAGCGA

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MSSPYPVRGRGTASNPHNRFAPSQSVAEDDGWYQEVPLTQGTQVTSETAKSIITRNSSPDIPFDRSINPYRGCEHGCIYC
FARPSHAYWDMSPGLDFETRLIAKTNAAALLEQQLSKPGYRCAPITLGANTDPYQPIEREYRITRATLEVLLRYRHPVSI
ITKGSLILRDLDLLAEMARLRLVSVFVSLTTLDDELKCILEPRAAAPKARLRAIRVLRQAGVPVGVLCAPMIPMINDSEL
EALLSEAKAAGALSASYVMLRLPLEVAPLFDEWLKTHYPQRAEHVMSLIRQSRGGAVYDSTFGSRMRGEGPFADLLAQRY
ALAIKRLGLNKRGGFALDCDAFCPPGGQMSLL

Sequences:

>Translated_352_residues
MSSPYPVRGRGTASNPHNRFAPSQSVAEDDGWYQEVPLTQGTQVTSETAKSIITRNSSPDIPFDRSINPYRGCEHGCIYC
FARPSHAYWDMSPGLDFETRLIAKTNAAALLEQQLSKPGYRCAPITLGANTDPYQPIEREYRITRATLEVLLRYRHPVSI
ITKGSLILRDLDLLAEMARLRLVSVFVSLTTLDDELKCILEPRAAAPKARLRAIRVLRQAGVPVGVLCAPMIPMINDSEL
EALLSEAKAAGALSASYVMLRLPLEVAPLFDEWLKTHYPQRAEHVMSLIRQSRGGAVYDSTFGSRMRGEGPFADLLAQRY
ALAIKRLGLNKRGGFALDCDAFCPPGGQMSLL
>Mature_351_residues
SSPYPVRGRGTASNPHNRFAPSQSVAEDDGWYQEVPLTQGTQVTSETAKSIITRNSSPDIPFDRSINPYRGCEHGCIYCF
ARPSHAYWDMSPGLDFETRLIAKTNAAALLEQQLSKPGYRCAPITLGANTDPYQPIEREYRITRATLEVLLRYRHPVSII
TKGSLILRDLDLLAEMARLRLVSVFVSLTTLDDELKCILEPRAAAPKARLRAIRVLRQAGVPVGVLCAPMIPMINDSELE
ALLSEAKAAGALSASYVMLRLPLEVAPLFDEWLKTHYPQRAEHVMSLIRQSRGGAVYDSTFGSRMRGEGPFADLLAQRYA
LAIKRLGLNKRGGFALDCDAFCPPGGQMSLL

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 38907; Mature: 38776

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPYPVRGRGTASNPHNRFAPSQSVAEDDGWYQEVPLTQGTQVTSETAKSIITRNSSPD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCC
IPFDRSINPYRGCEHGCIYCFARPSHAYWDMSPGLDFETRLIAKTNAAALLEQQLSKPGY
CCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCC
RCAPITLGANTDPYQPIEREYRITRATLEVLLRYRHPVSIITKGSLILRDLDLLAEMARL
EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHH
RLVSVFVSLTTLDDELKCILEPRAAAPKARLRAIRVLRQAGVPVGVLCAPMIPMINDSEL
HHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCHHH
EALLSEAKAAGALSASYVMLRLPLEVAPLFDEWLKTHYPQRAEHVMSLIRQSRGGAVYDS
HHHHHHHHHHCCHHHCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
TFGSRMRGEGPFADLLAQRYALAIKRLGLNKRGGFALDCDAFCPPGGQMSLL
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SSPYPVRGRGTASNPHNRFAPSQSVAEDDGWYQEVPLTQGTQVTSETAKSIITRNSSPD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCC
IPFDRSINPYRGCEHGCIYCFARPSHAYWDMSPGLDFETRLIAKTNAAALLEQQLSKPGY
CCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCC
RCAPITLGANTDPYQPIEREYRITRATLEVLLRYRHPVSIITKGSLILRDLDLLAEMARL
EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHH
RLVSVFVSLTTLDDELKCILEPRAAAPKARLRAIRVLRQAGVPVGVLCAPMIPMINDSEL
HHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCHHH
EALLSEAKAAGALSASYVMLRLPLEVAPLFDEWLKTHYPQRAEHVMSLIRQSRGGAVYDS
HHHHHHHHHHCCHHHCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
TFGSRMRGEGPFADLLAQRYALAIKRLGLNKRGGFALDCDAFCPPGGQMSLL
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]