| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is yvdB [H]
Identifier: 66043557
GI number: 66043557
Start: 304898
End: 306430
Strand: Reverse
Name: yvdB [H]
Synonym: Psyr_0287
Alternate gene names: 66043557
Gene position: 306430-304898 (Counterclockwise)
Preceding gene: 66043558
Following gene: 66043555
Centisome position: 5.03
GC content: 61.71
Gene sequence:
>1533_bases ATGGGTATTACAGCATTGAAAACCGCTTTACCACGGGAGCTGCTCGCTTCCGTGGTCGTGTTCCTGGTCGCCCTGCCGCT GTGCATGGGGATCGCCATTGCATCCGGCATGCCTCCGGCCAAGGGTCTGATCACCGGCATCGTGGGCGGGCTGATAGTCG GCTGGATAGCCGGTTCGCCGTTGCAGGTCAGCGGTCCCGCAGCCGGTCTGGCAGTACTGGTTTTTGAAGTGGTACGCGAG CACGGCATGGCCATGCTGGGTCCTATCCTGGTACTCGCCGGATTGCTTCAGCTGCTGGCAGGTCGATTCAAGCTTGGTTG CTGGTTCCGGGTCACGGCACCTGCGGTGGTCTATGGCATGCTCGCCGGTATCGGCGTGTTGATCGTACTGTCACAGGCAC ACGTGATGTTCGACAGCGGTCCCAAACCCTCCGGGCTGGACAATCTGATCGCCTTCCCGTCCACACTGATCCAGGCCTTC GGGCCAGGCACCGGCATGCAGGCCGGTATGCTCGGTCTGGGCACCATGCTGATCATGTGGGGCTGGGAAAAACTCCGTCC GCAGTCTTTGCGCTTCGTACCCGGCGCACTGCTGGGCGTGGGTATCGCAACCGGTATCAGTCTGTTCATGGCCTTGCAGG TCAAGCGTGTCGAAGTGCCTGACAACCTGGCCGACGCCATCGACTGGCTTCGCCCGGCTGACCTGATGAACCTGGCCGAC CCTGCCATTCTGGTTGCCGCTATCGTCGTAGCGTTCATCGCCAGTGCCGAGACGCTGCTTTCTGCCTCGGCGGTCGACCG CATGCACAGTGGCCAGCGTTCGGACTTCGACAAGGAGCTCAGCGCTCAAGGTGTGGGCAATATGCTCTGCGGCGTGCTCG GTGCATTGCCGATGACCGGCGTTATCGTACGCAGTTCGGCCAACGTCCAGGCCGGTGCTACCACGCGCTTCTCGACGATC TTCCACGGCCTGTGGCTGCTGGCGTTCGTATTGCTGCTGTCGAGCGTGCTGCAAAGCATTCCGGTCGCGAGTCTGGCCGG CGTGCTGGTCTACACCGGTCTGAAGCTGGTCGACCTGAAGGCATTTCGTGGTCTGGGCCGCTATGGCCGGATGCCGATGT TCACGTATGCGGCGACTGCCGTGGCGATCATCTTCACCGACCTGCTGACCGGTGTACTGGTCGGTTTCGGCCTGACCCTG GTGAAGCTGGCGTTCAAGGCTTCGCGTCTGAAGATCAATGTGGTCGAACTGGCGGGCGAGAAGGAATTCGAGCTGCGTCT GGTCGGTGCCGCAACCTTCCTCAAGGTACCGGCGCTGACTCAGGCACTGGGCACTATCCCACAGGGCAGCACGGTGCATG TGCCGTTGGGCAATCTGTCCTACATCGACCACTCGTGTCTGGAACTGCTGGAAGAATGGGGTCGTTCCAATGCCGCTCAT GGCACCCGGTTGCTTATCGAACCGCGGGGCTTGAAGCGTCGTCTTGAAGGGCGGATCTACACCACAACGGGGATCGGCTC GGGCGCAGCCTGA
Upstream 100 bases:
>100_bases CAGTCCGACTGACGGCAAGCCCTTCTTTATCAGCTGATGGCGGCTGCGCAGGATGCGCGTCGCCCGTCTTGCCTCGTCTG AAGAATCCCGGAGAAGCGTC
Downstream 100 bases:
>100_bases TAGTCGCCACCCTGTTATCACAGCCCTGGAAACATGAGAGCCGGATGGGTCTTCGCGTAGCAGCGGAGCGATATCCGGCT CCTTCCATTGCCGGCGAAGA
Product: sulphate transporter
Products: Proton [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MGITALKTALPRELLASVVVFLVALPLCMGIAIASGMPPAKGLITGIVGGLIVGWIAGSPLQVSGPAAGLAVLVFEVVRE HGMAMLGPILVLAGLLQLLAGRFKLGCWFRVTAPAVVYGMLAGIGVLIVLSQAHVMFDSGPKPSGLDNLIAFPSTLIQAF GPGTGMQAGMLGLGTMLIMWGWEKLRPQSLRFVPGALLGVGIATGISLFMALQVKRVEVPDNLADAIDWLRPADLMNLAD PAILVAAIVVAFIASAETLLSASAVDRMHSGQRSDFDKELSAQGVGNMLCGVLGALPMTGVIVRSSANVQAGATTRFSTI FHGLWLLAFVLLLSSVLQSIPVASLAGVLVYTGLKLVDLKAFRGLGRYGRMPMFTYAATAVAIIFTDLLTGVLVGFGLTL VKLAFKASRLKINVVELAGEKEFELRLVGAATFLKVPALTQALGTIPQGSTVHVPLGNLSYIDHSCLELLEEWGRSNAAH GTRLLIEPRGLKRRLEGRIYTTTGIGSGAA
Sequences:
>Translated_510_residues MGITALKTALPRELLASVVVFLVALPLCMGIAIASGMPPAKGLITGIVGGLIVGWIAGSPLQVSGPAAGLAVLVFEVVRE HGMAMLGPILVLAGLLQLLAGRFKLGCWFRVTAPAVVYGMLAGIGVLIVLSQAHVMFDSGPKPSGLDNLIAFPSTLIQAF GPGTGMQAGMLGLGTMLIMWGWEKLRPQSLRFVPGALLGVGIATGISLFMALQVKRVEVPDNLADAIDWLRPADLMNLAD PAILVAAIVVAFIASAETLLSASAVDRMHSGQRSDFDKELSAQGVGNMLCGVLGALPMTGVIVRSSANVQAGATTRFSTI FHGLWLLAFVLLLSSVLQSIPVASLAGVLVYTGLKLVDLKAFRGLGRYGRMPMFTYAATAVAIIFTDLLTGVLVGFGLTL VKLAFKASRLKINVVELAGEKEFELRLVGAATFLKVPALTQALGTIPQGSTVHVPLGNLSYIDHSCLELLEEWGRSNAAH GTRLLIEPRGLKRRLEGRIYTTTGIGSGAA >Mature_509_residues GITALKTALPRELLASVVVFLVALPLCMGIAIASGMPPAKGLITGIVGGLIVGWIAGSPLQVSGPAAGLAVLVFEVVREH GMAMLGPILVLAGLLQLLAGRFKLGCWFRVTAPAVVYGMLAGIGVLIVLSQAHVMFDSGPKPSGLDNLIAFPSTLIQAFG PGTGMQAGMLGLGTMLIMWGWEKLRPQSLRFVPGALLGVGIATGISLFMALQVKRVEVPDNLADAIDWLRPADLMNLADP AILVAAIVVAFIASAETLLSASAVDRMHSGQRSDFDKELSAQGVGNMLCGVLGALPMTGVIVRSSANVQAGATTRFSTIF HGLWLLAFVLLLSSVLQSIPVASLAGVLVYTGLKLVDLKAFRGLGRYGRMPMFTYAATAVAIIFTDLLTGVLVGFGLTLV KLAFKASRLKINVVELAGEKEFELRLVGAATFLKVPALTQALGTIPQGSTVHVPLGNLSYIDHSCLELLEEWGRSNAAHG TRLLIEPRGLKRRLEGRIYTTTGIGSGAA
Specific function: Possible Sulfate Transporter. [C]
COG id: COG0659
COG function: function code P; Sulfate permease and related transporters (MFS superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 STAS domain [H]
Homologues:
Organism=Homo sapiens, GI262206105, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI262206075, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI262206069, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI262206063, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=6e-11, Organism=Escherichia coli, GI87081859, Length=381, Percent_Identity=27.2965879265092, Blast_Score=94, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002645 - InterPro: IPR001902 - InterPro: IPR011547 [H]
Pfam domain/function: PF01740 STAS; PF00916 Sulfate_transp [H]
EC number: NA
Molecular weight: Translated: 53374; Mature: 53243
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGITALKTALPRELLASVVVFLVALPLCMGIAIASGMPPAKGLITGIVGGLIVGWIAGSP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC LQVSGPAAGLAVLVFEVVREHGMAMLGPILVLAGLLQLLAGRFKLGCWFRVTAPAVVYGM EEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH LAGIGVLIVLSQAHVMFDSGPKPSGLDNLIAFPSTLIQAFGPGTGMQAGMLGLGTMLIMW HHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH GWEKLRPQSLRFVPGALLGVGIATGISLFMALQVKRVEVPDNLADAIDWLRPADLMNLAD CHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCHHHHHHCC PAILVAAIVVAFIASAETLLSASAVDRMHSGQRSDFDKELSAQGVGNMLCGVLGALPMTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHCHHC VIVRSSANVQAGATTRFSTIFHGLWLLAFVLLLSSVLQSIPVASLAGVLVYTGLKLVDLK EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHH AFRGLGRYGRMPMFTYAATAVAIIFTDLLTGVLVGFGLTLVKLAFKASRLKINVVELAGE HHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCC KEFELRLVGAATFLKVPALTQALGTIPQGSTVHVPLGNLSYIDHSCLELLEEWGRSNAAH CCEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCC GTRLLIEPRGLKRRLEGRIYTTTGIGSGAA CCEEEECCHHHHHHHCCCEEEEECCCCCCC >Mature Secondary Structure GITALKTALPRELLASVVVFLVALPLCMGIAIASGMPPAKGLITGIVGGLIVGWIAGSP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC LQVSGPAAGLAVLVFEVVREHGMAMLGPILVLAGLLQLLAGRFKLGCWFRVTAPAVVYGM EEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH LAGIGVLIVLSQAHVMFDSGPKPSGLDNLIAFPSTLIQAFGPGTGMQAGMLGLGTMLIMW HHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH GWEKLRPQSLRFVPGALLGVGIATGISLFMALQVKRVEVPDNLADAIDWLRPADLMNLAD CHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCHHHHHHCC PAILVAAIVVAFIASAETLLSASAVDRMHSGQRSDFDKELSAQGVGNMLCGVLGALPMTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHCHHC VIVRSSANVQAGATTRFSTIFHGLWLLAFVLLLSSVLQSIPVASLAGVLVYTGLKLVDLK EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHH AFRGLGRYGRMPMFTYAATAVAIIFTDLLTGVLVGFGLTLVKLAFKASRLKINVVELAGE HHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCC KEFELRLVGAATFLKVPALTQALGTIPQGSTVHVPLGNLSYIDHSCLELLEEWGRSNAAH CCEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCC GTRLLIEPRGLKRRLEGRIYTTTGIGSGAA CCEEEECCHHHHHHHCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; SO42- [Periplasm] [C]
Specific reaction: Proton [Periplasm] + SO42- [Periplasm] = Proton [Cytoplasm] + SO42- [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]