Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698

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The map label for this gene is yvdB [H]

Identifier: 66043557

GI number: 66043557

Start: 304898

End: 306430

Strand: Reverse

Name: yvdB [H]

Synonym: Psyr_0287

Alternate gene names: 66043557

Gene position: 306430-304898 (Counterclockwise)

Preceding gene: 66043558

Following gene: 66043555

Centisome position: 5.03

GC content: 61.71

Gene sequence:

>1533_bases
ATGGGTATTACAGCATTGAAAACCGCTTTACCACGGGAGCTGCTCGCTTCCGTGGTCGTGTTCCTGGTCGCCCTGCCGCT
GTGCATGGGGATCGCCATTGCATCCGGCATGCCTCCGGCCAAGGGTCTGATCACCGGCATCGTGGGCGGGCTGATAGTCG
GCTGGATAGCCGGTTCGCCGTTGCAGGTCAGCGGTCCCGCAGCCGGTCTGGCAGTACTGGTTTTTGAAGTGGTACGCGAG
CACGGCATGGCCATGCTGGGTCCTATCCTGGTACTCGCCGGATTGCTTCAGCTGCTGGCAGGTCGATTCAAGCTTGGTTG
CTGGTTCCGGGTCACGGCACCTGCGGTGGTCTATGGCATGCTCGCCGGTATCGGCGTGTTGATCGTACTGTCACAGGCAC
ACGTGATGTTCGACAGCGGTCCCAAACCCTCCGGGCTGGACAATCTGATCGCCTTCCCGTCCACACTGATCCAGGCCTTC
GGGCCAGGCACCGGCATGCAGGCCGGTATGCTCGGTCTGGGCACCATGCTGATCATGTGGGGCTGGGAAAAACTCCGTCC
GCAGTCTTTGCGCTTCGTACCCGGCGCACTGCTGGGCGTGGGTATCGCAACCGGTATCAGTCTGTTCATGGCCTTGCAGG
TCAAGCGTGTCGAAGTGCCTGACAACCTGGCCGACGCCATCGACTGGCTTCGCCCGGCTGACCTGATGAACCTGGCCGAC
CCTGCCATTCTGGTTGCCGCTATCGTCGTAGCGTTCATCGCCAGTGCCGAGACGCTGCTTTCTGCCTCGGCGGTCGACCG
CATGCACAGTGGCCAGCGTTCGGACTTCGACAAGGAGCTCAGCGCTCAAGGTGTGGGCAATATGCTCTGCGGCGTGCTCG
GTGCATTGCCGATGACCGGCGTTATCGTACGCAGTTCGGCCAACGTCCAGGCCGGTGCTACCACGCGCTTCTCGACGATC
TTCCACGGCCTGTGGCTGCTGGCGTTCGTATTGCTGCTGTCGAGCGTGCTGCAAAGCATTCCGGTCGCGAGTCTGGCCGG
CGTGCTGGTCTACACCGGTCTGAAGCTGGTCGACCTGAAGGCATTTCGTGGTCTGGGCCGCTATGGCCGGATGCCGATGT
TCACGTATGCGGCGACTGCCGTGGCGATCATCTTCACCGACCTGCTGACCGGTGTACTGGTCGGTTTCGGCCTGACCCTG
GTGAAGCTGGCGTTCAAGGCTTCGCGTCTGAAGATCAATGTGGTCGAACTGGCGGGCGAGAAGGAATTCGAGCTGCGTCT
GGTCGGTGCCGCAACCTTCCTCAAGGTACCGGCGCTGACTCAGGCACTGGGCACTATCCCACAGGGCAGCACGGTGCATG
TGCCGTTGGGCAATCTGTCCTACATCGACCACTCGTGTCTGGAACTGCTGGAAGAATGGGGTCGTTCCAATGCCGCTCAT
GGCACCCGGTTGCTTATCGAACCGCGGGGCTTGAAGCGTCGTCTTGAAGGGCGGATCTACACCACAACGGGGATCGGCTC
GGGCGCAGCCTGA

Upstream 100 bases:

>100_bases
CAGTCCGACTGACGGCAAGCCCTTCTTTATCAGCTGATGGCGGCTGCGCAGGATGCGCGTCGCCCGTCTTGCCTCGTCTG
AAGAATCCCGGAGAAGCGTC

Downstream 100 bases:

>100_bases
TAGTCGCCACCCTGTTATCACAGCCCTGGAAACATGAGAGCCGGATGGGTCTTCGCGTAGCAGCGGAGCGATATCCGGCT
CCTTCCATTGCCGGCGAAGA

Product: sulphate transporter

Products: Proton [Cytoplasm]; SO42- [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MGITALKTALPRELLASVVVFLVALPLCMGIAIASGMPPAKGLITGIVGGLIVGWIAGSPLQVSGPAAGLAVLVFEVVRE
HGMAMLGPILVLAGLLQLLAGRFKLGCWFRVTAPAVVYGMLAGIGVLIVLSQAHVMFDSGPKPSGLDNLIAFPSTLIQAF
GPGTGMQAGMLGLGTMLIMWGWEKLRPQSLRFVPGALLGVGIATGISLFMALQVKRVEVPDNLADAIDWLRPADLMNLAD
PAILVAAIVVAFIASAETLLSASAVDRMHSGQRSDFDKELSAQGVGNMLCGVLGALPMTGVIVRSSANVQAGATTRFSTI
FHGLWLLAFVLLLSSVLQSIPVASLAGVLVYTGLKLVDLKAFRGLGRYGRMPMFTYAATAVAIIFTDLLTGVLVGFGLTL
VKLAFKASRLKINVVELAGEKEFELRLVGAATFLKVPALTQALGTIPQGSTVHVPLGNLSYIDHSCLELLEEWGRSNAAH
GTRLLIEPRGLKRRLEGRIYTTTGIGSGAA

Sequences:

>Translated_510_residues
MGITALKTALPRELLASVVVFLVALPLCMGIAIASGMPPAKGLITGIVGGLIVGWIAGSPLQVSGPAAGLAVLVFEVVRE
HGMAMLGPILVLAGLLQLLAGRFKLGCWFRVTAPAVVYGMLAGIGVLIVLSQAHVMFDSGPKPSGLDNLIAFPSTLIQAF
GPGTGMQAGMLGLGTMLIMWGWEKLRPQSLRFVPGALLGVGIATGISLFMALQVKRVEVPDNLADAIDWLRPADLMNLAD
PAILVAAIVVAFIASAETLLSASAVDRMHSGQRSDFDKELSAQGVGNMLCGVLGALPMTGVIVRSSANVQAGATTRFSTI
FHGLWLLAFVLLLSSVLQSIPVASLAGVLVYTGLKLVDLKAFRGLGRYGRMPMFTYAATAVAIIFTDLLTGVLVGFGLTL
VKLAFKASRLKINVVELAGEKEFELRLVGAATFLKVPALTQALGTIPQGSTVHVPLGNLSYIDHSCLELLEEWGRSNAAH
GTRLLIEPRGLKRRLEGRIYTTTGIGSGAA
>Mature_509_residues
GITALKTALPRELLASVVVFLVALPLCMGIAIASGMPPAKGLITGIVGGLIVGWIAGSPLQVSGPAAGLAVLVFEVVREH
GMAMLGPILVLAGLLQLLAGRFKLGCWFRVTAPAVVYGMLAGIGVLIVLSQAHVMFDSGPKPSGLDNLIAFPSTLIQAFG
PGTGMQAGMLGLGTMLIMWGWEKLRPQSLRFVPGALLGVGIATGISLFMALQVKRVEVPDNLADAIDWLRPADLMNLADP
AILVAAIVVAFIASAETLLSASAVDRMHSGQRSDFDKELSAQGVGNMLCGVLGALPMTGVIVRSSANVQAGATTRFSTIF
HGLWLLAFVLLLSSVLQSIPVASLAGVLVYTGLKLVDLKAFRGLGRYGRMPMFTYAATAVAIIFTDLLTGVLVGFGLTLV
KLAFKASRLKINVVELAGEKEFELRLVGAATFLKVPALTQALGTIPQGSTVHVPLGNLSYIDHSCLELLEEWGRSNAAHG
TRLLIEPRGLKRRLEGRIYTTTGIGSGAA

Specific function: Possible Sulfate Transporter. [C]

COG id: COG0659

COG function: function code P; Sulfate permease and related transporters (MFS superfamily)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 STAS domain [H]

Homologues:

Organism=Homo sapiens, GI262206105, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=6e-11,
Organism=Homo sapiens, GI262206075, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=6e-11,
Organism=Homo sapiens, GI262206069, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=6e-11,
Organism=Homo sapiens, GI262206063, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=6e-11,
Organism=Escherichia coli, GI87081859, Length=381, Percent_Identity=27.2965879265092, Blast_Score=94, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002645
- InterPro:   IPR001902
- InterPro:   IPR011547 [H]

Pfam domain/function: PF01740 STAS; PF00916 Sulfate_transp [H]

EC number: NA

Molecular weight: Translated: 53374; Mature: 53243

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGITALKTALPRELLASVVVFLVALPLCMGIAIASGMPPAKGLITGIVGGLIVGWIAGSP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
LQVSGPAAGLAVLVFEVVREHGMAMLGPILVLAGLLQLLAGRFKLGCWFRVTAPAVVYGM
EEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
LAGIGVLIVLSQAHVMFDSGPKPSGLDNLIAFPSTLIQAFGPGTGMQAGMLGLGTMLIMW
HHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
GWEKLRPQSLRFVPGALLGVGIATGISLFMALQVKRVEVPDNLADAIDWLRPADLMNLAD
CHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCHHHHHHCC
PAILVAAIVVAFIASAETLLSASAVDRMHSGQRSDFDKELSAQGVGNMLCGVLGALPMTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHCHHC
VIVRSSANVQAGATTRFSTIFHGLWLLAFVLLLSSVLQSIPVASLAGVLVYTGLKLVDLK
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHH
AFRGLGRYGRMPMFTYAATAVAIIFTDLLTGVLVGFGLTLVKLAFKASRLKINVVELAGE
HHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCC
KEFELRLVGAATFLKVPALTQALGTIPQGSTVHVPLGNLSYIDHSCLELLEEWGRSNAAH
CCEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCC
GTRLLIEPRGLKRRLEGRIYTTTGIGSGAA
CCEEEECCHHHHHHHCCCEEEEECCCCCCC
>Mature Secondary Structure 
GITALKTALPRELLASVVVFLVALPLCMGIAIASGMPPAKGLITGIVGGLIVGWIAGSP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
LQVSGPAAGLAVLVFEVVREHGMAMLGPILVLAGLLQLLAGRFKLGCWFRVTAPAVVYGM
EEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
LAGIGVLIVLSQAHVMFDSGPKPSGLDNLIAFPSTLIQAFGPGTGMQAGMLGLGTMLIMW
HHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
GWEKLRPQSLRFVPGALLGVGIATGISLFMALQVKRVEVPDNLADAIDWLRPADLMNLAD
CHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCHHHHHHCC
PAILVAAIVVAFIASAETLLSASAVDRMHSGQRSDFDKELSAQGVGNMLCGVLGALPMTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHCHHC
VIVRSSANVQAGATTRFSTIFHGLWLLAFVLLLSSVLQSIPVASLAGVLVYTGLKLVDLK
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHH
AFRGLGRYGRMPMFTYAATAVAIIFTDLLTGVLVGFGLTLVKLAFKASRLKINVVELAGE
HHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCC
KEFELRLVGAATFLKVPALTQALGTIPQGSTVHVPLGNLSYIDHSCLELLEEWGRSNAAH
CCEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCC
GTRLLIEPRGLKRRLEGRIYTTTGIGSGAA
CCEEEECCHHHHHHHCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; SO42- [Periplasm] [C]

Specific reaction: Proton [Periplasm] + SO42- [Periplasm] = Proton [Cytoplasm] + SO42- [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]